CF833672

Overview
NameCF833672
Unique NameCF833672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQ+INVQNKNSSYFVEWIPNNVKSSVCDIPP+ LKM+STFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  313 LTASAMFRGKMSTKEVDEQIINVQNKNSSYFVEWIPNNVKSSVCDIPPKNLKMSSTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 401
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASA FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCD+PPRGLKMA TF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASACFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDMPPRGLKMAGTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASA+FRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  309 LTASAIFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 397
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB8_ORYSJ (Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRG+MSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGRMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 84/89 (94.38%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL M+STF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLSMSSTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIP+NVKS+VCDIPP GL+MASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPHNVKSTVCDIPPTGLRMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMA TFIGNSTSIQEMFRRVS+QFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLKMAVTFIGNSTSIQEMFRRVSDQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.694e-43
Identity = 81/89 (91.01%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLKM+STFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKMSSTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.694e-43
Identity = 81/89 (91.01%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLK+ASTFIGNST+IQEMF+RV+EQFTAMFRRKAFLHWYT
Sbjct:  311 LTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPKGLKLASTFIGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYT 399
The following BLAST results are available for this feature:
BLAST of CF833672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB_CICAR9.721e-4495.51Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB4_WHEAT9.721e-4494.38Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB2_PEA9.721e-4495.51Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB8_ORYSJ1.270e-4395.51Tubulin beta-8 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_WHEAT1.270e-4394.38Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB3_MAIZE1.270e-4395.51Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB2_SOYBN1.270e-4395.51Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB1_ANEPH1.270e-4396.63Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB_EUPFO3.694e-4391.01Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]
TBB_EUPCR3.694e-4391.01Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833672 ID=CF833672; Name=CF833672; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTGACCACACTATAACTTTTATTGATTTATTTCCTTTTTCAGGAAA
ATCCTTAGCTCAAAAGTAAACAAAAAGATTGCTTGTACGTCTCAAGAAAT
CTTATAAGTTGAACTAAACCATACTAAAACATTGTCATGATTGATAGGTA
ATAGTATACCTATCATTTATTTAATTAAACAAAACAGAAAAAAAAAAAAG
CAGTGCTGCACTTAACCCATGTAGTCGGGGTTTCTTCCATATTGGGGGAC
ATTAAGAAAATCAAGATTGTCGTTCATGACATCATCATCAGCAATACTGC
CAAACGGAGGAAGCAGAAGACCCTCTGACCAGTTATTACCTGCGCAGGTG
GTTTCCATGTTCTTCAAATCAGAAAGATCTCTGCTTACGGGAATCAAAGT
TCGAAAGTAGTTAAGTTGCTTTTTCCCTCACAGCCTCAGCCATGTTCAGA
GGAAAGATGAGCACCAAAGAGGTGGATGAGCAGATGATTAATGTACAGAA
CAAGAATTCATCCTACTTTGTGGAGTGGATCCCCAACAATGTGAAGTCCA
GCGTGTGCGATATTCCACCACGTGGTCTGAAGATGGCATCTACTTTTATT
GGTAACTCAACATCCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTT
TACTGCCATGTTCCGGCGTAAGGCCTTTTTGCATTGGTATACTG
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