CF833672

Overview
NameCF833672
Unique NameCF833672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB4_CAEEL (Tubulin beta-4 chain OS=Caenorhabditis elegans GN=tbb-4 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.702e-41
Identity = 75/89 (84.27%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LT +AMFRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRG+KMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:  311 LTVAAMFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGVKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.702e-41
Identity = 76/89 (85.39%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM++TF+GNST+IQE+FRRVSEQFTAMFRRKAFLHWYT
Sbjct:  311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFVGNSTAIQELFRRVSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.702e-41
Identity = 75/89 (84.27%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LT +AMFRG+MS +EVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA+TF+GNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:  311 LTVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.702e-41
Identity = 76/89 (85.39%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKMA+TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:  311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 78/89 (87.64%), Postives = 85/89 (95.51%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTA AMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIP+N KSSVCDIPP GLKMA TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYT
Sbjct:  311 LTACAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPHNTKSSVCDIPPLGLKMAVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 76/89 (85.39%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTA A+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KS VCDIPP+GLKM+ TF+GNST+IQEMF+RVS+QFTAMFRRKAFLHWYT
Sbjct:  311 LTACALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNMKSGVCDIPPKGLKMSVTFVGNSTAIQEMFKRVSDQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 75/89 (84.27%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LTAS MFRG+MSTKEVDEQM+NVQ KNSSYFVEWIPNN+K+SVCDIPP+GLKM+STF+GNST+IQEMF+RV EQFTAM++RKAFLHWYT
Sbjct:  311 LTASCMFRGRMSTKEVDEQMLNVQTKNSSYFVEWIPNNIKASVCDIPPKGLKMSSTFVGNSTAIQEMFKRVGEQFTAMYKRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_PSEAM (Tubulin beta chain OS=Pseudopleuronectes americanus PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.314e-40
Identity = 76/89 (85.39%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM+STFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:  311 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYT 399
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_STRPU (Tubulin beta chain (Fragment) OS=Strongylocentrotus purpuratus PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.716e-40
Identity = 75/89 (84.27%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:  156 LTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 244
[Close]
BLAST of CF833672 vs. ExPASy Swiss-Prot
Match: TBB_PIG (Tubulin beta chain OS=Sus scrofa PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.716e-40
Identity = 75/89 (84.27%), Postives = 87/89 (97.75%), Query Frame = 1 
Query:  427 LTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 693
            LT +A+FRG+MS KEVDEQM+NVQNKNSSYFVEWIPNNVK++VCDIPPRGLKM++TFIGNST+IQE+F+R+SEQFTAMFRRKAFLHWYT
Sbjct:  311 LTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 399
The following BLAST results are available for this feature:
BLAST of CF833672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
TBB4_CAEEL7.702e-4184.27Tubulin beta-4 chain OS=Caenorhabditis elegans GN=... [more]
TBB2_ECHMU7.702e-4185.39Tubulin beta-2 chain OS=Echinococcus multiloculari... [more]
TBB2_CAEEL7.702e-4184.27Tubulin beta-2 chain OS=Caenorhabditis elegans GN=... [more]
TBB1_GADMO7.702e-4185.39Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB_PLAFA1.006e-4087.64Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]
TBB_EIMTE1.006e-4085.39Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB3_OOMCK1.006e-4084.27Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB_PSEAM1.314e-4085.39Tubulin beta chain OS=Pseudopleuronectes americanu... [more]
TBB_STRPU1.716e-4084.27Tubulin beta chain (Fragment) OS=Strongylocentrotu... [more]
TBB_PIG1.716e-4084.27Tubulin beta chain OS=Sus scrofa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04A08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833672 ID=CF833672; Name=CF833672; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTGACCACACTATAACTTTTATTGATTTATTTCCTTTTTCAGGAAA
ATCCTTAGCTCAAAAGTAAACAAAAAGATTGCTTGTACGTCTCAAGAAAT
CTTATAAGTTGAACTAAACCATACTAAAACATTGTCATGATTGATAGGTA
ATAGTATACCTATCATTTATTTAATTAAACAAAACAGAAAAAAAAAAAAG
CAGTGCTGCACTTAACCCATGTAGTCGGGGTTTCTTCCATATTGGGGGAC
ATTAAGAAAATCAAGATTGTCGTTCATGACATCATCATCAGCAATACTGC
CAAACGGAGGAAGCAGAAGACCCTCTGACCAGTTATTACCTGCGCAGGTG
GTTTCCATGTTCTTCAAATCAGAAAGATCTCTGCTTACGGGAATCAAAGT
TCGAAAGTAGTTAAGTTGCTTTTTCCCTCACAGCCTCAGCCATGTTCAGA
GGAAAGATGAGCACCAAAGAGGTGGATGAGCAGATGATTAATGTACAGAA
CAAGAATTCATCCTACTTTGTGGAGTGGATCCCCAACAATGTGAAGTCCA
GCGTGTGCGATATTCCACCACGTGGTCTGAAGATGGCATCTACTTTTATT
GGTAACTCAACATCCATCCAAGAGATGTTCAGGAGGGTGAGTGAACAGTT
TACTGCCATGTTCCGGCGTAAGGCCTTTTTGCATTGGTATACTG
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