CF833769

Overview
NameCF833769
Unique NameCF833769
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 42/127 (33.07%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  312 SCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAIH 686
            +C+ D +K    V   +  I+  E+++   L   GP+ V I+A  +  Y  G+     C  Y  +H VL+VGYG            PYWI+KN+WGE+WGE GY+++    N CG+ + + + A I+
Sbjct:  207 NCRVDVAKFVVKVKKCYRYIAVFEEKLKDLLRIVGPIPVAIDASDIVNYRRGIM--RYCSNYGFNHAVLLVGYGVEN-------NVPYWILKNTWGEDWGEQGYFRVQQNINACGIRNELLASAEIY 324          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 40/123 (32.52%), Postives = 69/123 (56.10%), Query Frame = -3
Query:  315 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 683
            CK    +++ + S   V+ + E+++   LV +GP++V I+   +  Y  G++      + L+H VL+VGYG          + PYWI+KNSWG  WGE GY+++   +N CG+ +  +S A +
Sbjct:  219 CKKSPFELSISGSRRYVLQN-ENKLRELLVVNGPISVAIDVSDLINYKAGIADICENNEGLNHAVLLVGYGVKN-------DVPYWILKNSWGAEWGEEGYFRVQRDKNSCGMMNEYASSAIL 333          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = -3
Query:  339 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDS 683
            C+++     A ++ F  +   ED + A +   GP+  GI+A     + Y GG+     C    + HGVL+VGYG  G   I      YW+IKNSWG+ WG  GY K+   + N CG+ S
Sbjct:  212 CRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKG---IETDGNHYWLIKNSWGKRWGIRGYMKLAKDKNNHCGIAS 327          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 40/127 (31.50%), Postives = 68/127 (53.54%), Query Frame = -3
Query:  315 CKFDKSK--IAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVWMQTYIGGV--SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVSSVAAI 683
            C  D+ +  + + V  +  +  +E+++   L   GP+ + I+A  +  Y  GV  SC       L+H VL+VGYG     P       YW+ KN+WG++WGENGY+++    N CG+ + ++S A +
Sbjct:  239 CGLDRHRPYVVSLVGCYRYVMVNEEKLKDLLRAVGPIPMAIDAADIVNYYRGVISSCE---NNGLNHAVLLVGYGVENGVP-------YWVFKNTWGDDWGENGYFRVRQNVNACGMVNDLASTAVL 355          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  330 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 683
            CK+      A  + F+V++  +++     V   GP++V ++A     Q Y  G+     C  K LDHGVL+VGYG  G          YW++KNSWG  WG NGY KI   + N CG+ +  S
Sbjct:  211 CKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEG---ANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 330          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 46/123 (37.40%), Postives = 62/123 (50.41%), Query Frame = -3
Query:  330 SCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 686
            SCK+      A  + F  I   E  +   +   GP++V ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG  WG  GY KI   R N CG+ +  S
Sbjct:  210 SCKYRAEFAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNK---YWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAAS 329          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = -3
Query:  330 NFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVDSMVS 644
            N ++ + DE + A  LV+  P++V    +   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+NGY+K+ MG+N+CG+ +  S
Sbjct:  258 NITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVP-------YWLIKNSWGADWGDNGYFKMEMGKNMCGIATCAS 357          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = -3
Query:  330 CKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 683
            CKF +  +AA ++++  I + ++    N +   P++V I+A     Q Y  GV     C    LDHGVL VG G+          + Y+I+KNSWG +WG NGY  +   + N CG+ +M S
Sbjct:  219 CKFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTDN-------GEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMAS 333          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 47/128 (36.72%), Postives = 66/128 (51.56%), Query Frame = -3
Query:  330 CKFDKSKIAAAVS--NFSVISSDEDQMAANLVKHGPLAVGINAVWM--QTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNV------CGVDSMVS 683
            C  DK+     V+   +  +  D+++     V H P++V I A     Q Y  GV     CG  LDHGV++VGYGS+         + YWII+NSWG NWG++GY K  + RN+      CG+  M S
Sbjct:  228 CNADKNNNTRVVTIDGYEDVPRDDEKSLKKAVAHQPVSVAIEASSQAFQLYKSGVMTG-TCGISLDHGVVVVGYGSTS-------GEDYWIIRNSWGLNWGDSGYVK--LQRNIDDPFGKCGIAMMPS 345          
BLAST of CF833769 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 41/122 (33.61%), Postives = 65/122 (53.28%), Query Frame = -3
Query:  330 CKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLAVGINAVWMQTYI--GGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGVDSMVS 683
            C++D    AA  S ++ +    ED +   +   GP++VG++A     ++   GV     C + ++HGVL+VGYG           K YW++KNSWG N+GE GY ++   + N CG+ S  S
Sbjct:  213 CQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD-------LNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS 327          
The following BLAST results are available for this feature:
BLAST of CF833769 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
CATV_NPVHC6.622e-1333.07Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATV_GVCP6.622e-1332.52Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATR_MOUSE6.622e-1335.29Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATV_NPVLD8.648e-1331.50Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATL2_HUMAN8.648e-1335.77Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATL1_MOUSE8.648e-1337.40Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
ORYC_ORYSJ1.129e-1237.61Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CYSP3_DICDI1.129e-1234.43Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CPR1_ARATH1.129e-1236.72Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CATS_HUMAN1.129e-1233.61Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04D18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833769 ID=CF833769; Name=CF833769; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTCTAAAAAGAAAATATAACATTATAATATTTCTACAAG
CCTCCTTAATAAAAAAAGAAAATATTAATACCATCTTCAATAACCCTTCT
GTAGCATGGTTAACTATAAAATAGATAAATATTACATTCTGACATGACAT
ATGCTTAAATATTACAAGAGCATAGAAAGTTCATGCCTCAGCCCAGGCAT
GTAGGCATCGTTATAATTGCAGACGGATATTTAAAAGGATATCCTATAAT
ATCTAGGTACAGAAGCTCCACTTGCCTAGCACAACCTCCATAATGTCTAG
CTTGAGGTTGTATGGATAGCAGCTACAGATGAGACCATGGAGTCGACCCC
ACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCTCCCCAGT
TCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTTGAATCTG
ATCGGGGCGAAACCTGAGGATCCATAGCCCACGATAAGCACTCCATGATC
CAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATATATGTTT
GCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTTCACCAAA
TTTGCAGCCATTTGATCTTCATCAGAGGAAATAACACTGAAATTAGATAC
AGCTGCAGCAATTTTGCTTTTGTCAAATTTGCAGGAAC
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