CF833774

Overview
NameCF833774
Unique NameCF833774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.594e-16
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P A +GD +  +V KG P++ ++V+ AV+VRQRKP R  DG  + FEDNA VI++  GE +G+ I GPI +E A+ +  IAS A  IV
Sbjct:   45 PKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          

HSP 2 Score: 21.9422 bits (45), Expect = 2.594e-16
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 2
Query:   68 GLPVAATVNCADNTEGKE 121
            GL   + + CADNT  +E
Sbjct:   11 GLEKGSLITCADNTGARE 28          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.594e-16
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P A +GD +  +V KG P++ ++V+ AV+VRQRKP R  DG  + FEDNA VI++  GE +G+ I GPI +E A+ +  IAS A  IV
Sbjct:   45 PKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          

HSP 2 Score: 21.9422 bits (45), Expect = 2.594e-16
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 2
Query:   68 GLPVAATVNCADNTEGKE 121
            GL   + + CADNT  +E
Sbjct:   11 GLEKGSLITCADNTGARE 28          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_METBF (50S ribosomal protein L14P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 41/88 (46.59%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P A +GDM + +VKKG P++ K+V+ AV+VRQ++ +R  DG+ + FEDNA VI + +G  KG+ I GPI +E A+ +P I + A+ IV
Sbjct:   45 PCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLRVSFEDNAMVITDEEGIPKGTDIKGPIAREVAERYPKIGTTASIIV 132          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_METAC (50S ribosomal protein L14P OS=Methanosarcina acetivorans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 40/88 (45.45%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P A +GDM + +VKKG P++ K+V+ AV+VRQ++ +R  DG+ + FEDNA VI + +G  KG+ I GP+ +E A+ +P I + A+ IV
Sbjct:   45 PCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P   +GD+   TVKKG PD+ KK++ AV++RQ+K  R  +G+ + F+DNA V+V+ K E KG+ I GP+ +E A+ +P + S A  IV
Sbjct:   45 PKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPVAREVAERYPKLGSMATIIV 132          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.647e-15
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P A +GD +  +V KG P++ ++V+ AV+VRQRKP R  DG  + FEDNA VIV+   + +G+ + GPI +E A  +  +ASAA  IV
Sbjct:   45 PKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132          

HSP 2 Score: 21.9422 bits (45), Expect = 4.647e-15
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 2
Query:   68 GLPVAATVNCADNTEGKE 121
            GL   + + CADNT  +E
Sbjct:   11 GLEKGSLITCADNTGARE 28          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_NATPD (50S ribosomal protein L14P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 4.647e-15
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P A +GD +  +V KG P++ ++V+ AV++RQRKP R  DG  + FEDNA VIV+   + +G+ + GPI +E A+ +  IAS A  IV
Sbjct:   45 PKAGLGDKITVSVTKGTPEMRRQVLEAVVIRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAERFGSIASTATIIV 132          

HSP 2 Score: 22.7126 bits (47), Expect = 4.647e-15
Identity = 9/24 (37.50%), Postives = 14/24 (58.33%), Query Frame = 2
Query:   50 NFRMSLGLPVAATVNCADNTEGKE 121
            N  ++ GL   + + CADNT  +E
Sbjct:    5 NADVTQGLEKGSLITCADNTGARE 28          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.040e-15
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P A +GD V  +V KG P++ ++V+ AV+VRQRKP R  +G  + FEDNA VI++   E +G+ I GP+ +E A+ +  IAS A  IV
Sbjct:   45 PKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVIIDDLDEPRGTEIKGPVAREVAERFGSIASTATMIV 132          

HSP 2 Score: 21.9422 bits (45), Expect = 6.040e-15
Identity = 8/18 (44.44%), Postives = 11/18 (61.11%), Query Frame = 2
Query:   68 GLPVAATVNCADNTEGKE 121
            GL   + + CADNT  +E
Sbjct:   11 GLSKGSLITCADNTGARE 28          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_METMA (50S ribosomal protein L14P OS=Methanosarcina mazei GN=rpl14p PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 39/88 (44.32%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  172 PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            P A +GDM + +VKKG P++ K+++ AV+VRQ++ +R  DG+ + FEDNA VI +  G  KG+ I GP+ +E A+ +P I + A+ IV
Sbjct:   45 PCAGIGDMCVVSVKKGTPEMRKQILLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEDGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CF833774 vs. ExPASy Swiss-Prot
Match: RL14_HALWD (50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 49/126 (38.89%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   58 DVTGFASGSNCELC*QH*GQRTFTSSQLRESKVASTV*PSACVGDMVMATVKKGKPDLMKKVMPAVIVRQRKPWRIKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPIIASAANAIV 435
            DVT      +   C  + G R      +  S       P A +GD V  +V KG P++ ++V+ AVIVRQRK  R  DG  + FEDNA VI++   E +G+ I GPI +E A+ +  IAS A  IV
Sbjct:    7 DVTKGLERGSLVTCADNTGARELKVISVMGSSGTKNRHPKAGIGDQVTVSVTKGTPEMRRQVLEAVIVRQRKSIRRPDGTRVKFEDNAAVIIDEMEEPRGTEIKGPIAREVAERFGSIASTATMIV 132          
The following BLAST results are available for this feature:
BLAST of CF833774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RL14_HALSA2.594e-1647.7350S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS32.594e-1647.7350S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_METBF3.010e-1546.5950S ribosomal protein L14P OS=Methanosarcina barke... [more]
RL14_METAC3.010e-1545.4550S ribosomal protein L14P OS=Methanosarcina aceti... [more]
RL14_METB63.931e-1544.3250S ribosomal protein L14P OS=Methanoregula boonei... [more]
RL14_HALMA4.647e-1545.4550S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_NATPD4.647e-1544.3250S ribosomal protein L14P OS=Natronomonas pharaon... [more]
RL14_HALLT6.040e-1545.4550S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_METMA6.706e-1544.3250S ribosomal protein L14P OS=Methanosarcina mazei... [more]
RL14_HALWD8.758e-1538.8950S ribosomal protein L14P OS=Haloquadratum walsby... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04D20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833774 ID=CF833774; Name=CF833774; organism=Citrus sinensis; type=EST; length=667bp
CTTTATCTGCCCATTGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACA
ACTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCT
GACAACACTGAGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCA
AAGGTCGCCTCAACCGTTTGACCGTCTGCCTGTGTTGGAGACATGGTTAT
GGCTACCGTGAAGAAAGGGAAGCCTGATCTTATGAAGAAGGTGATGCCCG
CCGTCATTGTAAGGCAGCGCAAGCCATGGCGCATAAAGGATGGTGTCTTC
ATGTACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAAT
GAAGGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGT
GGCCGATAATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGAC
CGATAACCTATATCATCCTTTTTGTTGCACTAAAAAGAAATCTGGTGAAG
TTTCATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTT
TGTTATTCTAGTTATGTAAGCGGTATGAAAGTTTGGAGGTTTGTTGATCT
TGATATCATTTTCATGCTGATTGTGTTTTTGAATTCAACTTCCGATGCAA
TACGGGTTCAATTTTAT
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