CF833809

Overview
NameCF833809
Unique NameCF833809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS3_SINAL (Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.392e-80
Identity = 148/191 (77.49%), Postives = 164/191 (85.86%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+DTHLDSLVGQALF           DPDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EA  PLGISDWN +FWIAHPGGPAILD VE K+GLK EK++ATR VLSEYGNMSSACVLFILD+MR+KS E+  A  GEGL+WGVL GFGPGLTVETVVLHSVP+
Sbjct:  205 GPSDTHLDSLVGQALFSDGAAAIIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDDVEKKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRRKSKEDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPV 395          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.818e-80
Identity = 148/190 (77.89%), Postives = 161/190 (84.74%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+++HLDSLVGQALF           DP   VERPL+QLVS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EA  PLGISDWN +FWIAHPGGPAILDQVE+K+GLK EKL++TR VL EYGNMSSACVLFILD+MRK S +E  +  GEGLDWGVL GFGPGLTVETVVLHSVPI
Sbjct:  200 GPSESHLDSLVGQALFGDGAAAVIVGSDPVVGVERPLFQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLKEAFGPLGISDWNSVFWIAHPGGPAILDQVEAKLGLKPEKLRSTRHVLGEYGNMSSACVLFILDEMRKSSAKEGMSSTGEGLDWGVLFGFGPGLTVETVVLHSVPI 389          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSJ (Chalcone synthase OS=Oryza sativa subsp. japonica GN=CHS PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.050e-80
Identity = 144/192 (75.00%), Postives = 165/192 (85.94%), Query Frame = -3
Query:  146 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPIQA 721
            GP+++HLDS+VGQALF           DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +A  PLGISDWN IFW+AHPGGPAILDQVE+K+GL  E+++ATR VLSEYGNMSSACVLFILD+MRK+S E+  A  GEG+DWGVL GFGPGLTVETVVLHSVPI A
Sbjct:  203 GPSESHLDSMVGQALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSY_ORYSI (Chalcone synthase OS=Oryza sativa subsp. indica GN=CHS PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.050e-80
Identity = 144/192 (75.00%), Postives = 165/192 (85.94%), Query Frame = -3
Query:  146 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPIQA 721
            GP+++HLDS+VGQALF           DPD +VERPL+Q+VS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L +A  PLGISDWN IFW+AHPGGPAILDQVE+K+GL  E+++ATR VLSEYGNMSSACVLFILD+MRK+S E+  A  GEG+DWGVL GFGPGLTVETVVLHSVPI A
Sbjct:  203 GPSESHLDSMVGQALFGDGAAAVIVGSDPDEAVERPLFQMVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALGDAFTPLGISDWNSIFWVAHPGGPAILDQVEAKVGLDKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPITA 394          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.050e-80
Identity = 148/191 (77.49%), Postives = 164/191 (85.86%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+DTHLDSLVGQALF           DPDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EA  PLGISDWN +FWIAHPGGPAILDQVE K+GLK EK++ATR VLSEYGNMSSACVLFILD+MRKKS ++  A  GEGL+WGVL GFGPGLTVETVVL SVP+
Sbjct:  204 GPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLEEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRKKSAQDGVATTGEGLEWGVLFGFGPGLTVETVVLRSVPL 394          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS4_SORBI (Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=3 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.050e-80
Identity = 146/190 (76.84%), Postives = 165/190 (86.84%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+++HLDS+VGQALF           DPD  VERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EA  PLGI+D+N IFW+AHPGGPAILDQVE+K+GLK E+++ATR VLSEYGNMSSACVLFILD+MRK+S E+ +A  GEGLDWGVL GFGPGLTVETVVLHSVPI
Sbjct:  204 GPSESHLDSMVGQALFGDGAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSY_CALCH (Chalcone synthase OS=Callistephus chinensis GN=CHS PE=2 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 5.289e-80
Identity = 144/189 (76.19%), Postives = 163/189 (86.24%), Query Frame = -3
Query:  155 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVP 721
            GP DTHLDSLVGQALF           DPD + ERPL++++S +QTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEK+L++A +PLGI+DWN IFWIAHPGGPAILDQVE K+GLK EK++ATR VLSEYGNMSSACVLFI+D+MRKKS E+  A  GEGLDWGVL GFGPGLTVETVVLHS+P
Sbjct:  203 GPNDTHLDSLVGQALFGDGAAAVIVGADPDLTTERPLFEMISAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALTQAFSPLGITDWNSIFWIAHPGGPAILDQVELKLGLKEEKMRATRHVLSEYGNMSSACVLFIIDEMRKKSAEDGAATTGEGLDWGVLFGFGPGLTVETVVLHSLP 391          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.908e-80
Identity = 147/191 (76.96%), Postives = 164/191 (85.86%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+DTHLDSLVGQALF           DPDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EA  PLGISDWN +FWIAHPGGPAILDQVE K+GLK EK++ATR V+ EYGNMSSACVLFILD+MRKKS ++  A  GEGL+WGVL GFGPGLTVETVVLHSVP+
Sbjct:  205 GPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVMREYGNMSSACVLFILDEMRKKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS6_SORBI (Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=3 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.178e-79
Identity = 145/190 (76.32%), Postives = 164/190 (86.32%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+++HLDS+VGQALF           DPD  VERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE+SL EA  PLGI+D+N IFW+AHPGGPAILDQVE+K+GLK E+++ATR VLSEYGNMSSACVLFILD+MRK+S E+ +A  GEG DWGVL GFGPGLTVETVVLHSVPI
Sbjct:  204 GPSESHLDSMVGQALFGDGAAAVIVGADPDERVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYNSIFWVAHPGGPAILDQVEAKVGLKKERMRATRHVLSEYGNMSSACVLFILDEMRKRSAEDGQATTGEGFDWGVLFGFGPGLTVETVVLHSVPI 393          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.539e-79
Identity = 147/191 (76.96%), Postives = 164/191 (85.86%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSV-ERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+DTHLDSLVGQALF           DPDTSV E+P++++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI KSL EA  PLGISDWN +FWIAHPGGPAILDQVE K+GLK EK++ATR VLSEYGNMSSACVLFILD+MR+KS ++  A  GEGL+WGVL GFGPGLTVETVVLHSVP+
Sbjct:  205 GPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEKPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIVKSLDEAFKPLGISDWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEMRRKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
The following BLAST results are available for this feature:
BLAST of CF833809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
CHS3_SINAL1.392e-8077.49Chalcone synthase 3 OS=Sinapis alba GN=CHS3 PE=2 S... [more]
CHSY_PERFR1.818e-8077.89Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHSY_ORYSJ4.050e-8075.00Chalcone synthase OS=Oryza sativa subsp. japonica ... [more]
CHSY_ORYSI4.050e-8075.00Chalcone synthase OS=Oryza sativa subsp. indica GN... [more]
CHSY_MATIN4.050e-8077.49Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHS4_SORBI4.050e-8076.84Chalcone synthase 4 OS=Sorghum bicolor GN=CHS4 PE=... [more]
CHSY_CALCH5.289e-8076.19Chalcone synthase OS=Callistephus chinensis GN=CHS... [more]
CHSY_CARAN6.908e-8076.96Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS6_SORBI1.178e-7976.32Chalcone synthase 6 OS=Sorghum bicolor GN=CHS6 PE=... [more]
CHSY_ARATH1.539e-7976.96Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04E24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04E24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833809 ID=CF833809; Name=CF833809; organism=Citrus sinensis; type=EST; length=726bp
GGTGAGGTCATAAGATAAAAGGCTCGATGCCTTAAAGTCAATTGACAAAA
CTAAACCTTCGCACGATCAACCAATAACTCAACTGTGAAAGCATACAACA
TAAAGTTACTGAACTACTACACATACTGATGGAGCTCTCAGTTCAAGCTT
GGATGGGGACACTGTGCAACACAACGGTCTCGACGGTGAGCCCCGGCCCG
AACCCTAACAACACACCCCAATCGAGCCCTTCCCCGGGGGGGGCTTTCGC
TTCCTCAACAGACTTCTTTCTCATATCGTCAAGGATGAACAAGACACAAG
CGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTGGCCTTCAGC
TTCTCCCCTTTGAGGCCCATTTTAGACTCCACTTGGTCCAGAATTGCGGG
CCCACCGGGGTGAGCGATCCAGAATATCTAGTTCCAGTCGCTGATGCCAA
GCGGGGCTAACGCTTCAGACAGGCTTTTCTCTATATTCTTTGAGATCAAG
CCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTCGCGCAAGTG
TCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCGAAGTCGACA
CGAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCGGCACCCACT
ATCACAGCAGCAGCACCATCACCGAACAAAGCCTGGCCCACTAGAGAATC
AAGATGAGTATCGGCAGGGCCGCAGA
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