CF833809

Overview
NameCF833809
Unique NameCF833809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS1_HORVU (Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.457e-77
Identity = 142/192 (73.96%), Postives = 159/192 (82.81%), Query Frame = -3
Query:  146 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPIQA 721
            GP ++HLDSLVGQALF           DPD SVERPL+QLVS SQTILPDS+GAIDGHLREVGLTFHLLKDVPGLISKNIE++L EA  PLGI  WN +FWIAH GGPAILD VE+K+ L  E+++ATR VLSEYGNMSSACVLFI+D+MRK+S E+  A  GEG+DWGVL GFGPGLTVETVVLHSVPI A
Sbjct:  203 GPHESHLDSLVGQALFGDGAAAVIIGADPDLSVERPLFQLVSASQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIERALEEAFKPLGIDHWNSVFWIAHQGGPAILDMVEAKVNLNKERMRATRHVLSEYGNMSSACVLFIMDEMRKRSAEDGHATTGEGMDWGVLFGFGPGLTVETVVLHSVPISA 394          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.209e-77
Identity = 143/189 (75.66%), Postives = 157/189 (83.07%), Query Frame = -3
Query:  155 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVP 721
            GP DTHLDSLVGQALF           DP   +E+PL+++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNI KSL EA  PLGISDWN IFWIAHPGGPAILDQVE+++ LK EKLK+TRQVL +YGNMSSACVLFILD+MRK S ++     GEGLDWGVL GFGPGLTVETVVLHSVP
Sbjct:  200 GPNDTHLDSLVGQALFGDGAGAVIVGSDPVIGIEKPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIRKSLVEAFKPLGISDWNSIFWIAHPGGPAILDQVETELSLKPEKLKSTRQVLRDYGNMSSACVLFILDEMRKASAKDGHRTTGEGLDWGVLFGFGPGLTVETVVLHSVP 388          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.219e-76
Identity = 143/188 (76.06%), Postives = 155/188 (82.45%), Query Frame = -3
Query:  158 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSV 721
            GP+DTHLDSLVGQALF           DP   VE+PL+++VS +QTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EA  PL ISDWN IFWIAHPGGPAILDQVE K+ LK EKL+ATR VLS+YGNMSSACVLFI+D+MRK S EE     GEGL+WGVL GFGPGLTVETVVLH V
Sbjct:  200 GPSDTHLDSLVGQALFGDGAAAVIIGSDPMPEVEKPLFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLVEAFRPLDISDWNSIFWIAHPGGPAILDQVEKKLALKPEKLRATRNVLSDYGNMSSACVLFIMDEMRKNSAEEGLMTTGEGLEWGVLFGFGPGLTVETVVLHGV 387          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS8_BROFI (Chalcone synthase 8 OS=Bromheadia finlaysoniana GN=CHS8 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.219e-76
Identity = 139/190 (73.16%), Postives = 160/190 (84.21%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+++HLDSLVGQALF           DPD++ ERPL+QLVS SQTILP+S+GAIDGHLRE+GLTFHLLKDVPGLISKNI+K L +A  PLG+ DWN IFWIAHPGGPAILDQVE K+GLK EKL A+R VL+EYGNMSSACVLFILD+MR++S E  +A  GEGL+WGVL GFGPGLTVET+VL SVPI
Sbjct:  201 GPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIFWIAHPGGPAILDQVEIKLGLKAEKLAASRNVLAEYGNMSSACVLFILDEMRRRSAEAGQATTGEGLEWGVLFGFGPGLTVETIVLRSVPI 390          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS4_BROFI (Chalcone synthase 4 OS=Bromheadia finlaysoniana GN=CHS4 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.219e-76
Identity = 139/190 (73.16%), Postives = 160/190 (84.21%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+++HLDSLVGQALF           DPD++ ERPL+QLVS SQTILP+S+GAIDGHLRE+GLTFHLLKDVPGLISKNI+K L +A  PLG+ DWN IFWIAHPGGPAILDQVE K+GLK EKL A+R VL+EYGNMSSACVLFILD+MR++S E  +A  GEGL+WGVL GFGPGLTVET+VL SVPI
Sbjct:  201 GPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIFWIAHPGGPAILDQVEIKLGLKAEKLAASRSVLAEYGNMSSACVLFILDEMRRRSAEAGQATTGEGLEWGVLFGFGPGLTVETIVLRSVPI 390          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS3_BROFI (Chalcone synthase 3 OS=Bromheadia finlaysoniana GN=CHS3 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.219e-76
Identity = 139/190 (73.16%), Postives = 160/190 (84.21%), Query Frame = -3
Query:  152 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVPI 721
            GP+++HLDSLVGQALF           DPD++ ERPL+QLVS SQTILP+S+GAIDGHLRE+GLTFHLLKDVPGLISKNI+K L +A  PLG+ DWN IFWIAHPGGPAILDQVE K+GLK EKL A+R VL+EYGNMSSACVLFILD+MR++S E  +A  GEGL+WGVL GFGPGLTVET+VL SVPI
Sbjct:  201 GPSESHLDSLVGQALFGDGAAAIIVGSDPDSATERPLFQLVSASQTILPESEGAIDGHLREIGLTFHLLKDVPGLISKNIQKCLLDAFKPLGVHDWNSIFWIAHPGGPAILDQVEIKLGLKAEKLAASRNVLAEYGNMSSACVLFILDEMRRRSAEAGQATTGEGLEWGVLFGFGPGLTVETIVLRSVPI 390          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSE_IPOPU (Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.592e-76
Identity = 144/188 (76.60%), Postives = 156/188 (82.98%), Query Frame = -3
Query:  158 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSV 721
            GP+D HLDSLVGQALF           DPD  +ERPL+QLVS +QTILPDS GAIDGHLREVGLTFHLLKDVPGLISK+IEKSL+EA  PLGI DWN +FWIAHPGGPAILDQVE K+ LK EKL+ATR VLSEYGNMSSACVLFILD+MRK S +E     GEGL+WGVL GFGPGLTVETVVLHSV
Sbjct:  200 GPSDAHLDSLVGQALFGDGAAALIIGSDPDPDLERPLFQLVSAAQTILPDSGGAIDGHLREVGLTFHLLKDVPGLISKHIEKSLNEAFQPLGIRDWNSLFWIAHPGGPAILDQVEEKLELKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSKEGLNTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSE_IPONI (Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.592e-76
Identity = 144/188 (76.60%), Postives = 156/188 (82.98%), Query Frame = -3
Query:  158 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSV 721
            GP+D HLDSLVGQALF           DPD  +ERPL+QLVS +QTILPDS GAIDGHLREVGLTFHLLKDVPGLISK+IEKSL+EA  PLGI DWN +FWIAHPGGPAILDQVE K+ LK EKL+ATR VLSEYGNMSSACVLFILD+MRK S +E     GEGL+WGVL GFGPGLTVETVVLHSV
Sbjct:  200 GPSDAHLDSLVGQALFGDGAAALIIGSDPDPDLERPLFQLVSAAQTILPDSGGAIDGHLREVGLTFHLLKDVPGLISKHIEKSLNEAFQPLGIHDWNSLFWIAHPGGPAILDQVEEKLELKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSKEGLNTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHSB_SOLTU (Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.592e-76
Identity = 142/188 (75.53%), Postives = 158/188 (84.04%), Query Frame = -3
Query:  158 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSV 721
            GP+++HLDSLVGQALF           DP   VERPL++LVS +QT++PDS+GAIDGHLREVGLTFHLLKDVPGLISKNIEKSL EA  PLGISDWN +FWIAHPGGPAILDQVE K+GLK EKL+ATR+VLS YGNMSSACVLFILD+MRK S +E     GEGL+WGVL GFGPGLTVETVVLHSV
Sbjct:  200 GPSESHLDSLVGQALFGDGAAAIIMGSDPIIGVERPLFELVSAAQTLVPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLLEAFQPLGISDWNSLFWIAHPGGPAILDQVELKLGLKQEKLRATREVLSNYGNMSSACVLFILDEMRKASTKEGLGTTGEGLEWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF833809 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.592e-76
Identity = 139/189 (73.54%), Postives = 161/189 (85.19%), Query Frame = -3
Query:  155 GPADTHLDSLVGQALFXXXXXXXXXXXDPDTSVERPLYQLVSTSQTILPDSDGAIDGHLREVGLTFHLLKDVPGLISKNIEKSLSEALAPLGISDWN*IFWIAHPGGPAILDQVESKMGLKGEKLKATRQVLSEYGNMSSACVLFILDDMRKKSVEEAKAPPGEGLDWGVLLGFGPGLTVETVVLHSVP 721
            GP + HLDSLVGQALF           DPD SVERPL+++VS +QTILPDS+GAIDGHL+EVGLTFHLLKDVP LI+KNIEK+L +A +PL I+DWN IFWIAHPGGPAILDQVE K+GL+ EKL+A+R VLSEYGNMSSACVLFILD+MRKKS+++ K   GEGL+WGVL GFGPGLTVETVVLHS+P
Sbjct:  206 GPNEGHLDSLVGQALFGDGAAAVIIGSDPDLSVERPLFEMVSAAQTILPDSEGAIDGHLKEVGLTFHLLKDVPALIAKNIEKALIQAFSPLNINDWNSIFWIAHPGGPAILDQVEFKLGLREEKLRASRHVLSEYGNMSSACVLFILDEMRKKSIKDGKTTTGEGLEWGVLFGFGPGLTVETVVLHSLP 394          
The following BLAST results are available for this feature:
BLAST of CF833809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
CHS1_HORVU2.457e-7773.96Chalcone synthase 1 OS=Hordeum vulgare GN=CHS1 PE=... [more]
CHS1_DAUCA3.209e-7775.66Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHSY_HYDMC1.219e-7676.06Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHS8_BROFI1.219e-7673.16Chalcone synthase 8 OS=Bromheadia finlaysoniana GN... [more]
CHS4_BROFI1.219e-7673.16Chalcone synthase 4 OS=Bromheadia finlaysoniana GN... [more]
CHS3_BROFI1.219e-7673.16Chalcone synthase 3 OS=Bromheadia finlaysoniana GN... [more]
CHSE_IPOPU1.592e-7676.60Chalcone synthase E OS=Ipomoea purpurea GN=CHSE PE... [more]
CHSE_IPONI1.592e-7676.60Chalcone synthase E OS=Ipomoea nil GN=CHSE PE=2 SV... [more]
CHSB_SOLTU1.592e-7675.53Chalcone synthase 1B OS=Solanum tuberosum GN=CHS1B... [more]
CHS3_GERHY1.592e-7673.54Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04E24_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04E24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833809 ID=CF833809; Name=CF833809; organism=Citrus sinensis; type=EST; length=726bp
GGTGAGGTCATAAGATAAAAGGCTCGATGCCTTAAAGTCAATTGACAAAA
CTAAACCTTCGCACGATCAACCAATAACTCAACTGTGAAAGCATACAACA
TAAAGTTACTGAACTACTACACATACTGATGGAGCTCTCAGTTCAAGCTT
GGATGGGGACACTGTGCAACACAACGGTCTCGACGGTGAGCCCCGGCCCG
AACCCTAACAACACACCCCAATCGAGCCCTTCCCCGGGGGGGGCTTTCGC
TTCCTCAACAGACTTCTTTCTCATATCGTCAAGGATGAACAAGACACAAG
CGCTTGACATGTTACCGTACTCACTCAACACTTGACGTGTGGCCTTCAGC
TTCTCCCCTTTGAGGCCCATTTTAGACTCCACTTGGTCCAGAATTGCGGG
CCCACCGGGGTGAGCGATCCAGAATATCTAGTTCCAGTCGCTGATGCCAA
GCGGGGCTAACGCTTCAGACAGGCTTTTCTCTATATTCTTTGAGATCAAG
CCGGGGACGTCTTTAAGCAAATGGAAAGTGAGACCGACTTCGCGCAAGTG
TCCGTCAATTGCACCGTCAGAGTCAGGGAGGATCGTCTGCGAAGTCGACA
CGAGCTGATACAACGGACGCTCGACCGACGTGTCAGGATCGGCACCCACT
ATCACAGCAGCAGCACCATCACCGAACAAAGCCTGGCCCACTAGAGAATC
AAGATGAGTATCGGCAGGGCCGCAGA
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