CF833894

Overview
NameCF833894
Unique NameCF833894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.602e-31
Identity = 64/114 (56.14%), Postives = 88/114 (77.19%), Query Frame = 3
Query:   45 LKLVPSLVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPS-LNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            +KL   L+ CM+V GP+++ A ++CG V+ +LA CIG++  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ AAR++ S LN   AAG+P ACGV+IPYKISTST+C  VR
Sbjct:    5 MKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTVR 118          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.733e-31
Identity = 61/114 (53.51%), Postives = 87/114 (76.32%), Query Frame = 3
Query:   45 LKLVPSLVLCMLVTGPLSA-QAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSI-PSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            +KL   ++ CM+V GP++A +A+TCG V+ ++APCIG++  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ AAR++ P+LN   AAG+P ACGVS+P+ IST+T+C+ V+
Sbjct:    5 MKLACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPFPISTNTNCNNVK 118          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.088e-31
Identity = 66/111 (59.46%), Postives = 83/111 (74.77%), Query Frame = 3
Query:   48 KLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            K+   +VLCM+V  P  A+AITCGQV+ +LAPC+ +LR+ GP+   CC GV++L  +ARTT DRQ AC CLK AA +I  +NL  AAGLP  CGV+IPYKIS STDCSKV+
Sbjct:    6 KIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLGR-CCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.951e-31
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 3
Query:   75 MLVTGPLSAQAITCGQVSGSLAPCIGFLRS--GGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 377
            +L T P +   +TCGQV+G+LAPC+G+LRS    P+P+ CCN VR LN AARTT D++TAC CLKQ A ++  LNLN AAGLP  CGV+IPYKIS +TDC++V
Sbjct:   17 VLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.356e-30
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 3
Query:  108 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            ITCGQVS +LAPCI +++ GG +P  CCNG+R++N  ARTT DR+ ACNCLKQ + SIP +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.771e-30
Identity = 62/114 (54.39%), Postives = 84/114 (73.68%), Query Frame = 3
Query:   45 LKLVPSLVLCMLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGP-IPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 380
            +KL   +  CM+V GP+++ A ++CG VSG +APCIG+L    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P++N+  AAGLP ACGV+IPYKIS +T+C+ V+
Sbjct:    5 MKLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 3
Query:   66 VLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 377
            V CM+ +    A AI+CGQV+  L PC G+L +GGP+P  CCNGVR LN AA+TTPDRQTAC CLK    +   +NLNNA  LPG CG+SI YKI+ + DCSK+
Sbjct:   13 VACMVFSASY-ADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILAANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 61/118 (51.69%), Postives = 80/118 (67.80%), Query Frame = 3
Query:   33 QMAALKLVPSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNN--AAGLPGACGVSIPYKISTSTDCSKVR 380
            Q+  L  + +++ CM V GP +  A++CGQV  +L PCI ++ +GG +   CC GVRSL + A+TT DRQ+ CNCLKQA   IP  N N   AAGLPG CGV+IPYKIS STDC  ++
Sbjct:    6 QLLKLVCLVAVMCCMAVGGPKAMAAVSCGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSIK 123          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 3
Query:   36 MAALKLV-PSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 377
            MA  +LV  +LV  +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
BLAST of CF833894 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.958e-29
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 3
Query:   36 MAALKLV-PSLVLCMLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 377
            MA  +LV  +LV  +L+  P +A AITCGQV+ ++ PC+ + R G      CC+GVRSL AAA TT DR+TACNCLK AAR I  LN  NAA +P  CGVS+PY IS S DCS+V
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRV 115          
The following BLAST results are available for this feature:
BLAST of CF833894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP1_ARATH1.602e-3156.14Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTPA_BRAOT2.733e-3153.51Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP1_TOBAC6.088e-3159.46Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_DAUCA7.951e-3160.19Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUDO1.356e-3062.64Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTPD_BRAOT1.771e-3054.39Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP_GERHY6.731e-3057.69Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP3_PRUDU1.958e-2951.69Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP1_ORYSJ1.958e-2955.65Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.958e-2955.65Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04H16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833894 ID=CF833894; Name=CF833894; organism=Citrus sinensis; type=EST; length=636bp
CAGGAATTCGGCACCACTTTAAGGAGAAATCTCAAATGGCTGCCCTCAAG
CTTGTCCCTTCTTTGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGC
TCAGGCCATAACATGTGGGCAGGTGAGTGGCTCATTGGCACCATGCATCG
GTTTCTTGAGATCGGGCGGCCCTATACCTATGCCATGCTGCAACGGCGTC
AGGTCTCTCAACGCTGCCGCCAGAACCACACCTGACCGCCAAACTGCATG
CAACTGCTTGAAGCAAGCCGCCAGATCAATCCCTAGCCTCAACCTTAATA
ATGCTGCTGGTCTTCCAGGAGCTTGTGGAGTCAGCATTCCTTACAAGATC
AGCACCTCCACTGACTGCTCTAAGGTCAGGTGAACAGGAATCTGGGCCGT
TGATTTTCAGGTTTAAGTTGACGGAGTAGAATAAATGTATAATAATAAGG
ACATTTTTGTGTCCGATTTATGAGTCTCTCTCTACACTTTGTACTGCGAG
TCTCGTTCGCGCCCTCGTTTCATGTTATGTTTTATTGTCTTTGCTTTTCA
TGTCATCGCCAGTTTGTGTCTATTCTGTTTATTAAATGAAATCTTGCCTT
GCGTTCAGTTTAACAACCTTAAAAAAAAAAAAAAAA
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