CF833939

Overview
NameCF833939
Unique NameCF833939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.526e-56
Identity = 106/183 (57.92%), Postives = 135/183 (73.77%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  DPE+  +I+ E  RQ   I LIASENFT+ AV +ALG+ + NKYSEG PG RYYGGNE I  +E LC+ RAL+ F L P +WGVNVQ  SGSPAN   Y A+++PH+R+MGLDLP GGHL+HGY T   +KISA S YFE++PY+V+  TG IDYD LE+ A+ +RPK+++ G SAY R
Sbjct:   18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGGNEHIHRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPHGGHLSHGYQTD-SRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAYCR 199          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.993e-56
Identity = 105/183 (57.38%), Postives = 133/183 (72.68%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++ VDPE+  ++  E+ RQ   + LI SENFTS AV++ LGS + NKYSEG PG RYYGGN+FID+ E+LC++RAL  + LDP +WGVNVQ  SG+PAN  AY+AV+E  DR+MGLDLP GGHL+HGY    G KIS  S YF ++PY VN+ TG IDYD L   +  FRPK+I+ G SAY R
Sbjct:   27 VQEVDPEMFRILSDERSRQKHSVTLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLMGLDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTETGIIDYDTLAMTSKLFRPKVIVAGTSAYSR 209          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.189e-46
Identity = 98/185 (52.97%), Postives = 120/185 (64.86%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++L   DP I DLI  E+RRQ   I LI SEN+ S AV+EA G+ LTNKYSEG P  RYY G +FID+IE +   RA Q F +D      NVQPYSGSPAN A Y A+L P D +MG+ LP GGHLTHG+       +SAT I+F S+ Y V   TG ID+D++ E A   RPK+I  GG+A PR
Sbjct:    9 AALTATDPTIADLIRAEERRQSEKIRLIPSENYVSKAVLEATGTVLTNKYSEGYPNRRYYEGQQFIDQIETIAIERAKQLFGVD----HANVQPYSGSPANLAIYLALLSPGDTVMGMALPMGGHLTHGW------PVSATGIWFRSVQYGVRRDTGRIDFDEVREVARRERPKVIFAGGTAIPR 183          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_SALRD (Serine hydroxymethyltransferase OS=Salinibacter ruber (strain DSM 13855) GN=glyA PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.166e-46
Identity = 95/186 (51.08%), Postives = 127/186 (68.28%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 653
            S+L   DPEIHD+I+KE +RQ  G+ELIASENF S AV+EA+G+ALTNKY+EG+PG RYYGG E +D  E L R RA + +  D   W VNVQP++G+ AN A Y  +L+P D  +GLDL  GGHLTH      G  ++ + I +E+  Y V   TG ID +++ ++A + +PK+I  G SAYPRD
Sbjct:    2 SALRNQDPEIHDVIQKEVQRQNDGLELIASENFASRAVMEAMGTALTNKYAEGLPGKRYYGGCEVVDRAEELARERAKELYDCD---W-VNVQPHAGAQANSAVYLTLLDPGDTFLGLDLSHGGHLTH------GSPVNFSGILYEAEYYGVEEETGRIDMNRVRDRAKEVQPKMISIGASAYPRD 177          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CHLPB (Serine hydroxymethyltransferase OS=Chlorobium phaeobacteroides (strain BS1) GN=glyA PE=3 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.212e-45
Identity = 102/181 (56.35%), Postives = 119/181 (65.75%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 644
            L+  D  I D I  E RRQ   +ELIASENF S AV+EA GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  D     VNVQP+SGS AN     AVL+P DRIMGLDL  GGHLTH      G K++ +   FE+  Y V+  TG ID +K+EE AL+ RPKLIICG SAY
Sbjct:    6 LQRQDKGIFDAITAEVRRQTETLELIASENFASRAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMGVLFAVLKPGDRIMGLDLSHGGHLTH------GSKVNFSGQLFEAHSYGVDRETGCIDMNKVEEMALEVRPKLIICGASAY 176          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_THEAB (Serine hydroxymethyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glyA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.067e-45
Identity = 98/188 (52.13%), Postives = 123/188 (65.43%), Query Frame = 3
Query:   87 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            W N  ++  DPEI+D+I KE  RQ  G+ELIASENF S AVIEA+GS LTNKY+EG PG RYYGG E++D  E L R RA + F++       NVQP+SGS AN  AY AV EP D IMG+ L  GGHLTH      G  ++ +   +  +PY VN  T  IDYD++ + AL  +PK+I+ GGSAY R
Sbjct:    2 WEN--VKKTDPEIYDVILKEWERQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTH------GASVNFSGRIYNVVPYGVNPETEVIDYDEVRDLALKHKPKIIVAGGSAYSR 177          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_SYNY3 (Serine hydroxymethyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glyA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.700e-45
Identity = 95/191 (49.74%), Postives = 125/191 (65.45%), Query Frame = 3
Query:   78 VNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +N+     L T DP +  +I++E +RQ   IELIASENFTS AV+ A GS LTNKY+EG+PG RYYGG EF+D+ E L  SR  + F         NVQP+SG+ ANFA +  +L+P D IMG+DL  GGHLTH      G  ++ +  +FE   Y V   TG +DYDK+ ++AL+ +PKL+ICG SAYPR
Sbjct:    1 MNQTNLDFLATSDPALAAIIDRELQRQRTHIELIASENFTSAAVMAAQGSVLTNKYAEGLPGKRYYGGCEFVDQAETLAISRVKELFGAA----HANVQPHSGAQANFAVFLTLLQPGDTIMGMDLSHGGHLTH------GSPVNVSGKWFEVAHYGVEKETGRLDYDKIRQQALEVKPKLLICGYSAYPR 181          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_SORC5 (Serine hydroxymethyltransferase OS=Sorangium cellulosum (strain So ce56) GN=glyA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.700e-45
Identity = 98/187 (52.41%), Postives = 121/187 (64.71%), Query Frame = 3
Query:   90 GNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            G  +L  VDPEI +LI  E+RR+   + LIASEN+ S AV+EA GS LTNKYSEG P  RYY G + +D +E L R+R  + F  D     VNVQPYSGSPAN A Y A  + +D IMGL LP+GGHLTHG+       +S T  YF+S+PY V  S   ID D++ + A   RPKLI CG +AYPR
Sbjct:    9 GLRALNEVDPEIAELIRLEERREADTLRLIASENYVSRAVLEATGSVLTNKYSEGYPHKRYYEGQQQVDVVEELARTRVAKLFGAD----HVNVQPYSGSPANLAVYLAFAQANDTIMGLGLPAGGHLTHGW------SVSITGKYFKSVPYGVRESDHRIDLDQVRDLARAHRPKLIWCGTTAYPR 185          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.700e-45
Identity = 95/186 (51.08%), Postives = 124/186 (66.67%), Query Frame = 3
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            + SL   DP+I + I  E+RRQ  G+ELIASENF S AV++A GS  TNKY+EG PG RYYGG E+ D +ENL R RA + F  +      NVQP+SGS AN  AY A+L+P D I+GL+L  GGHLTHG+       ++ +   ++ +PY V   T  IDYD+LE+ AL+  PK+I+ GGSAYPR
Sbjct:    6 SQSLNEEDPQIAEAIANEERRQHEGLELIASENFVSEAVLQAAGSVFTNKYAEGYPGKRYYGGCEYADVVENLARDRAKELFGAE----HANVQPHSGSSANMEAYGAILQPGDTILGLNLAHGGHLTHGH------PLNFSGKTYKIVPYGVTKETETIDYDELEKLALEHHPKVIVGGGSAYPR 181          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_PROM4 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9211) GN=glyA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.526e-45
Identity = 96/187 (51.34%), Postives = 128/187 (68.45%), Query Frame = 3
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 653
            NS+LE  DP I  LI++E +RQ   +ELIASENFTS AV+EA GS LTNKY+EG+P  RYYGG E ID+IE L   RA Q F     +W  NVQP+SG+ ANF+ + ++LEP ++IMG+DL  GGHLTH      G  ++ +  +F+++ Y V+  T  ++ + + E AL  RPKLIICG SAYPR+
Sbjct:    5 NSALEDADPNIASLIQEESKRQENHLELIASENFTSKAVMEAQGSVLTNKYAEGLPNKRYYGGCEHIDKIEGLAIERAKQLF---KAEW-ANVQPHSGAQANFSVFLSLLEPGEKIMGMDLSHGGHLTH------GSPVNVSGKWFKAIHYGVDKETQRLEMENVREIALKNRPKLIICGYSAYPRN 181          
The following BLAST results are available for this feature:
BLAST of CF833939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANAL1.526e-5657.92Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYM_CANGA1.993e-5657.38Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYA_ACIC13.189e-4652.97Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_SALRD4.166e-4651.08Serine hydroxymethyltransferase OS=Salinibacter ru... [more]
GLYA_CHLPB1.212e-4556.35Serine hydroxymethyltransferase OS=Chlorobium phae... [more]
GLYA_THEAB2.067e-4552.13Serine hydroxymethyltransferase OS=Thermosipho afr... [more]
GLYA_SYNY32.700e-4549.74Serine hydroxymethyltransferase OS=Synechocystis s... [more]
GLYA_SORC52.700e-4552.41Serine hydroxymethyltransferase OS=Sorangium cellu... [more]
GLYA_ACIBL2.700e-4551.08Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA_PROM43.526e-4551.34Serine hydroxymethyltransferase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04J05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833939 ID=CF833939; Name=CF833939; organism=Citrus sinensis; type=EST; length=654bp
TCTAAATCCACCCCTTTATACCCTTTTTTTCGTTTTCAGTGAATCCAGAA
AACCCAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATC
TCTTGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGC
GCCGACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCC
TTCGCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGA
GGGAATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGA
TCGAGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCC
ACCCAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTT
CGCCGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGG
ACTTGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGG
AAAAAGATATCGGCGACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGT
GAATTCGAGTACTGGGTATATTGATTACGATAAGTTGGAGGAGAAGGCGT
TGGATTTTAGGCCGAAGTTGATCATTTGCGGTGGGAGTGCGTATCCGAGG
GACT
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