CF833939

Overview
NameCF833939
Unique NameCF833939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CHLP8 (Serine hydroxymethyltransferase OS=Chlorobaculum parvum (strain NCIB 8327) GN=glyA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.526e-45
Identity = 98/181 (54.14%), Postives = 121/181 (66.85%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 644
            L+ +DPE+ + I  E RRQ   +ELIASENFTS AV+EA GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  +     VNVQP+SGS AN A   AVL+P D IMGLDL  GGHLTH      G K++ +  +F++  Y V+  TG ID + +EE AL  +PKLII G SAY
Sbjct:    6 LKRLDPEVFEAIANETRRQTETLELIASENFTSTAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDSIMGLDLSHGGHLTH------GSKVNFSGQFFDAHSYGVDKETGIIDMNAVEEMALKVKPKLIITGASAY 176          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CHLTE (Serine hydroxymethyltransferase OS=Chlorobium tepidum GN=glyA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.606e-45
Identity = 98/184 (53.26%), Postives = 122/184 (66.30%), Query Frame = 3
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 644
            N  L+ +DPE+ + I  E +RQ   +ELIASENFTS AV+EA GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  +     VNVQP+SGS AN A   AVL+P D IMGLDL  GGHLTH      G K++ +  +F++  Y V+  TG ID +K+EE A   +PKLII G SAY
Sbjct:    3 NDILKRLDPEVFEAIANETKRQTETLELIASENFTSKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAENLARDRAKKLFGCE----YVNVQPHSGSSANMAVLFAVLKPGDAIMGLDLSHGGHLTH------GSKVNFSGQFFDAHSYGVDKETGIIDMNKVEEMARRVKPKLIITGASAY 176          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_DESPS (Serine hydroxymethyltransferase OS=Desulfotalea psychrophila GN=glyA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.015e-45
Identity = 95/185 (51.35%), Postives = 124/185 (67.03%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++L+  DPEI  LI++E+ RQ   I LIASEN+ S AV+EA GS LTNKYSEG PG RYY G + ID+IE++   RA   F  +     VNVQPYSGSPAN A Y A L+P D I+G+ LP GGHLTH      G K+S +  YF ++ Y +N   G +DY+++  KAL+ +PK++I G SAYPR
Sbjct:   11 TALQQQDPEIFSLIQQEEVRQHNKIRLIASENYVSSAVLEATGSILTNKYSEGYPGKRYYEGQQLIDQIESIAIDRAKAVFGAE----HVNVQPYSGSPANMAVYLAFLKPGDTILGMALPHGGHLTH------GSKVSISGKYFNAVSYALNEE-GILDYEEIRNKALECKPKILIAGHSAYPR 184          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.856e-45
Identity = 99/181 (54.70%), Postives = 120/181 (66.30%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 644
            L+  D E+ + I KE  RQ   +ELIASENFTS AV++A GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F  D     VNVQP+SGS AN A   +VL+P DRIMGLDL  GGHLTH      G  ++ +   +E+  Y V+  TG ID +K+EE AL  RPKLIICG SAY
Sbjct:    6 LQKQDSELFEAIAKETGRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTH------GSSVNFSGQMYEAHSYGVDRETGCIDMNKVEELALQVRPKLIICGASAY 176          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CHLSY (Serine hydroxymethyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=glyA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.856e-45
Identity = 97/183 (53.01%), Postives = 120/183 (65.57%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L   DP I DLIE+E +RQ +G+ELIASEN+TS AV+EA GS LTNKY+EG+PG RYYGG EF+D IE L   RA Q F         NVQP+SG+ AN A +TA+L+P D I+G+ L  GGHLTH      G  ++ +  ++    Y V++ TG IDYD L  KA   RPKLI  G SAYPR
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIERACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTH------GSPVNFSGKWYNVHFYGVDAQTGQIDYDDLASKARAIRPKLITSGASAYPR 177          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_DESRM (Serine hydroxymethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.026e-44
Identity = 97/186 (52.15%), Postives = 121/186 (65.05%), Query Frame = 3
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            N  L   DPE+   IE E +RQ R IELIASENF S AV+EA GS LTNKY+EG PG RYYGG EF+D  E+L  SRA + F  D      NVQP+SG+ ANFA Y A+L+P D+I+G++L  GGHLTH      G  ++ +  YF  + Y V   TG I+Y+KL E AL  +PK+I+ G SAY R
Sbjct:    3 NGKLAQTDPELAKAIELEHQRQQRNIELIASENFVSPAVLEAQGSILTNKYAEGYPGKRYYGGCEFVDIAESLAISRAKKLFGAD----HANVQPHSGAQANFAVYFALLQPGDKILGMNLAHGGHLTH------GSPVNVSGKYFNVVAYGVEEDTGCINYEKLREIALQEKPKMIVAGASAYAR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBL (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.340e-44
Identity = 93/185 (50.27%), Postives = 126/185 (68.11%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTH      G  ++ +   +  + Y V+  T  IDYD+L++ AL+ RPK+I+ G SAYPR
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTH------GSPVNFSGKLYNFISYGVDKETETIDYDQLKKIALENRPKMIVSGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBJ (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Kyoto / Type A2) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.340e-44
Identity = 93/185 (50.27%), Postives = 126/185 (68.11%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTH      G  ++ +   +  + Y V+  T  IDY+KL++ AL+ RPK+I+ G SAYPR
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTH------GSPVNFSGKLYNFISYGVDKETETIDYEKLKKIALENRPKMIVSGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBK (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Okra / Type B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.750e-44
Identity = 93/185 (50.27%), Postives = 126/185 (68.11%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTH      G  ++ +   +  + Y V+  T  IDYD+L++ AL+ RPK+I+ G SAYPR
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFVAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTH------GSPVNFSGKLYNFISYGVDKETETIDYDQLKKIALENRPKMIVSGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CHLAD (Serine hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=glyA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.750e-44
Identity = 97/183 (53.01%), Postives = 119/183 (65.03%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L   DP I DLIE+E +RQ +G+ELIASEN+TS AV+EA GS LTNKY+EG+PG RYYGG EF+D IE L   RA Q F         NVQP+SG+ AN A +TA+L+P D I+G+ L  GGHLTH      G  ++ +  ++    Y V+  TG IDYD L  KA   RPKLI  G SAYPR
Sbjct:    5 LRATDPIIADLIEREAQRQRQGLELIASENYTSLAVMEAQGSVLTNKYAEGLPGRRYYGGCEFVDAIEQLAIDRACQLFGTS----HANVQPHSGAQANIAVFTALLQPGDTILGMRLDHGGHLTH------GSPVNFSGKWYNVHFYGVDPQTGQIDYDDLAAKARAIRPKLITSGASAYPR 177          
The following BLAST results are available for this feature:
BLAST of CF833939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CHLP83.526e-4554.14Serine hydroxymethyltransferase OS=Chlorobaculum p... [more]
GLYA_CHLTE4.606e-4553.26Serine hydroxymethyltransferase OS=Chlorobium tepi... [more]
GLYA_DESPS6.015e-4551.35Serine hydroxymethyltransferase OS=Desulfotalea ps... [more]
GLYA_PELPB7.856e-4554.70Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]
GLYA_CHLSY7.856e-4553.01Serine hydroxymethyltransferase OS=Chloroflexus au... [more]
GLYA_DESRM1.026e-4452.15Serine hydroxymethyltransferase OS=Desulfotomaculu... [more]
GLYA_CLOBL1.340e-4450.27Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBJ1.340e-4450.27Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOBK1.750e-4450.27Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CHLAD1.750e-4453.01Serine hydroxymethyltransferase OS=Chloroflexus ag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04J05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833939 ID=CF833939; Name=CF833939; organism=Citrus sinensis; type=EST; length=654bp
TCTAAATCCACCCCTTTATACCCTTTTTTTCGTTTTCAGTGAATCCAGAA
AACCCAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATC
TCTTGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGC
GCCGACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCC
TTCGCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGA
GGGAATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGA
TCGAGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCC
ACCCAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTT
CGCCGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGG
ACTTGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGG
AAAAAGATATCGGCGACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGT
GAATTCGAGTACTGGGTATATTGATTACGATAAGTTGGAGGAGAAGGCGT
TGGATTTTAGGCCGAAGTTGATCATTTGCGGTGGGAGTGCGTATCCGAGG
GACT
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