CF833939

Overview
NameCF833939
Unique NameCF833939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACC4 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain B4264) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDADSHRINYDDVLAKAKEHKPKLIVAGASAYPR 176
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACC3 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain 03BB102) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDAESHRINYDDVLAKAKEHKPKLIVAGASAYPR 176
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACC2 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain G9842) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDADSHRINYDDVLAKAKEHKPKLIVAGASAYPR 176
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACC1 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDAESHRINYDDVLAKAKEHKPKLIVAGASAYPR 176
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACC0 (Serine hydroxymethyltransferase OS=Bacillus cereus (strain AH820) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDAESHRINYDDVLAKAKEHKPKLIVAGASAYPR 176
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACAN (Serine hydroxymethyltransferase OS=Bacillus anthracis GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDAESHCINYDDVLAKAKEHKPKLIVAGASAYPR 176
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACAH (Serine hydroxymethyltransferase OS=Bacillus thuringiensis (strain Al Hakam) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    5 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDAESHRINYDDVLAKAKEHKPKLIVAGASAYPR 177
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACAC (Serine hydroxymethyltransferase OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDAESHCINYDDVLAKAKEHKPKLIVAGASAYPR 176
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_BACAA (Serine hydroxymethyltransferase OS=Bacillus anthracis (strain A0248) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 83/183 (45.36%), Postives = 115/183 (62.84%), Query Frame = 3 
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  D ++   IE E  RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG E +D +E++ R R  + F  +     VNVQP+SG+ AN A Y  +LE  D ++G++L  GGHLTH      G  ++ + + +  + Y V++ +  I+YD +  KA + +PKLI+ G SAYPR
Sbjct:    4 LKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVVEDIARDRVKEIFGAE----HVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGGHLTH------GSPVNFSGVQYNFVEYGVDAESHCINYDDVLAKAKEHKPKLIVAGASAYPR 176
[Close]
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_AGRRK (Serine hydroxymethyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glyA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.587e-37
Identity = 88/186 (47.31%), Postives = 112/186 (60.22%), Query Frame = 3 
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            N SL   DPEI   I KE  RQ   IELIASEN  S AV+EA GS +TNKY+EG PG RYYGG +++D  E L   RA + F ++      NVQP SGS  N A + A+L+P D  MGLDL SGGHLTH      G  ++ +  +F  + Y V      +D + ++ KA + +PKLII GG+AY R
Sbjct:   11 NRSLADTDPEIFGAIGKELGRQRHEIELIASENIVSRAVLEAQGSIMTNKYAEGYPGKRYYGGCQYVDIAEELAIERAKKLFGVN----FANVQPNSGSQMNQAVFLALLQPGDTFMGLDLNSGGHLTH------GSPVNMSGKWFNVVSYGVREGDNLLDMEAVQRKAEETKPKLIIAGGTAYSR 186
The following BLAST results are available for this feature:
BLAST of CF833939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_BACC41.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACC31.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACC21.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACC11.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACC01.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus cereus... [more]
GLYA_BACAN1.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus anthra... [more]
GLYA_BACAH1.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus thurin... [more]
GLYA_BACAC1.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus anthra... [more]
GLYA_BACAA1.587e-3745.36Serine hydroxymethyltransferase OS=Bacillus anthra... [more]
GLYA_AGRRK1.587e-3747.31Serine hydroxymethyltransferase OS=Agrobacterium r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04J05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833939 ID=CF833939; Name=CF833939; organism=Citrus sinensis; type=EST; length=654bp
TCTAAATCCACCCCTTTATACCCTTTTTTTCGTTTTCAGTGAATCCAGAA
AACCCAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATC
TCTTGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGC
GCCGACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCC
TTCGCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGA
GGGAATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGA
TCGAGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCC
ACCCAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTT
CGCCGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGG
ACTTGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGG
AAAAAGATATCGGCGACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGT
GAATTCGAGTACTGGGTATATTGATTACGATAAGTTGGAGGAGAAGGCGT
TGGATTTTAGGCCGAAGTTGATCATTTGCGGTGGGAGTGCGTATCCGAGG
GACT
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