CF833939

Overview
NameCF833939
Unique NameCF833939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.899e-44
Identity = 92/185 (49.73%), Postives = 126/185 (68.11%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++L+  DPE+ D+I+KE+ RQ   IELIASENFTS +V+EA+GS LTNKY+EG P  RYYGG EF+DE+E+L R R  + F  +      NVQP+SGS AN A Y +VL+  D I+G+DL  GGHLTH      G  ++ +   +  + Y V+  T  IDY++L++ AL+ RPK+I+ G SAYPR
Sbjct:    4 TNLKNTDPELLDMIKKEEERQEYNIELIASENFTSLSVMEAMGSLLTNKYAEGYPHKRYYGGCEFVDEVEDLARERLKKLFAAE----HANVQPHSGSQANMAVYMSVLQTGDTILGMDLSHGGHLTH------GSPVNFSGKLYNFISYGVDKETETIDYEQLKKIALENRPKMIVSGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_SOLUE (Serine hydroxymethyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.092e-44
Identity = 96/184 (52.17%), Postives = 121/184 (65.76%), Query Frame = 3
Query:   99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +L  VDPEI+  I+ E  RQ   +ELIASENFTS AV+EA GS  TNKY+EG PG RYYGG E+ D +ENL R RA + F  +     VNVQP+SGS AN AAY AV+ P D +MGL+L  GGHLTHG+  +   K       ++ +PY V      IDYD++E+ A + +PK+II G SAYPR
Sbjct:   10 TLAEVDPEIYQAIQHETARQDGQLELIASENFTSEAVLEATGSVFTNKYAEGYPGKRYYGGCEYTDVVENLARERASKLFGAE----YVNVQPHSGSQANQAAYGAVVSPGDTVMGLNLAHGGHLTHGHALNFSGKT------YKIVPYNVRKEDELIDYDEVEKLAREHQPKMIIAGASAYPR 183          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_NITSB (Serine hydroxymethyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.092e-44
Identity = 93/183 (50.82%), Postives = 125/183 (68.31%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L+  DP ++++ EKE +RQ   +E+IASENFTS AV+EA+GS  TNKY+EG PG RYYGG E+ D IE L   RA + F  +     VNVQP+SGS AN   Y A+L+P+D+I+G+DL  GGHLTH      G K++A+   ++S  Y VN   G+IDYD++ + A   +PKLI+CG SAYPR
Sbjct:    4 LKNQDPAVYEIFEKELQRQTDHLEMIASENFTSPAVMEAMGSVFTNKYAEGYPGKRYYGGCEYADAIEELAIQRAKELFGCE----FVNVQPHSGSQANQGVYLALLKPYDKILGMDLSHGGHLTH------GAKVNASGKIYQSFFYGVNDE-GWIDYDRVLDIAKIVKPKLIVCGASAYPR 175          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_HELMI (Serine hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.092e-44
Identity = 93/191 (48.69%), Postives = 125/191 (65.45%), Query Frame = 3
Query:   78 VNEWGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++EW +  L  VDPE+   +++EK+RQ   IELIASENF S AV+EA GS LTNKY+EG PG RYYGG EF+D++E L   RA + F  +      NVQP+SG+ AN   Y A LEP D ++G++L  GGHLTH      G  ++ +  YF  + Y V++ TG IDYD++   A + +PKLI+ G SAYPR
Sbjct:    1 MSEWKH--LHQVDPEVAAAMDREKKRQKNNIELIASENFVSEAVMEAAGSVLTNKYAEGYPGKRYYGGCEFVDQVERLAIERAKRLFGAE----HANVQPHSGANANMGVYFACLEPGDTVLGMNLAHGGHLTH------GSPVNISGKYFRFVAYGVDAHTGRIDYDEVARIARETKPKLIVAGASAYPR 179          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK5 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.092e-44
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            + L+  D +I+ +IE+E  RQ  GIELIASENFTS +V+EA+GS LTNKY+EG PG RYYGG   +D+ E+L R R  + F+ +     VNVQP+SGS AN A Y +VL+P D ++G+ L  GGHLTH      G K+S +   +  + Y +NS T  IDYD++ E AL  +PK+I+ G SAYPR
Sbjct:    4 NELKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTH------GSKVSFSGKLYNFVSYGLNSDTEIIDYDEMRELALKHKPKMIVSGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CLOK1 (Serine hydroxymethyltransferase OS=Clostridium kluyveri (strain NBRC 12016) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.092e-44
Identity = 92/185 (49.73%), Postives = 124/185 (67.03%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            + L+  D +I+ +IE+E  RQ  GIELIASENFTS +V+EA+GS LTNKY+EG PG RYYGG   +D+ E+L R R  + F+ +     VNVQP+SGS AN A Y +VL+P D ++G+ L  GGHLTH      G K+S +   +  + Y +NS T  IDYD++ E AL  +PK+I+ G SAYPR
Sbjct:    4 NELKNTDKDIYGIIEEEWERQKNGIELIASENFTSKSVMEAMGSFLTNKYAEGYPGKRYYGGCYIVDKAEDLARDRMKKLFNAE----HVNVQPHSGSQANMAVYMSVLKPGDTVLGMSLNHGGHLTH------GSKVSFSGKLYNFVSYGLNSDTEIIDYDEMRELALKHKPKMIVSGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_THETN (Serine hydroxymethyltransferase OS=Thermoanaerobacter tengcongensis GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.651e-44
Identity = 92/183 (50.27%), Postives = 120/183 (65.57%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +   DPEI ++I KE  RQ   IELIASENF S AV+EA+G+ LTNKY+EG PG RYYGG E++D  E L R R  + F  +      NVQP+SG+ AN AAY A+L+P D ++G+DL  GGHLTH      G K++ +   +  + Y V   TGYIDYD++E+ A   +PKLI+ G SAYPR
Sbjct:    6 IRKTDPEIAEVILKELNRQRNKIELIASENFVSRAVMEAMGTPLTNKYAEGYPGRRYYGGCEYVDMAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALLKPGDTVLGMDLAHGGHLTH------GSKVNFSGQIYNFVSYGVREDTGYIDYDQVEDLAKKHKPKLIVAGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CARHZ (Serine hydroxymethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=glyA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.651e-44
Identity = 94/186 (50.54%), Postives = 123/186 (66.13%), Query Frame = 3
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            N  L+ VDPEI + +EKE  RQ   IELIASENF S AV+EA+GS LTNKY+EG+PG RYYGG E++D +ENL R RA + F  +     VNVQP+SG+ AN AAY A LEP D ++G++L  GGHLTH      G  ++ +   +  + Y V   T  I+Y+K+ E A   +PK+I+ G SAYPR
Sbjct:    5 NLRLKDVDPEIFEAMEKELSRQREKIELIASENFVSRAVMEAMGSHLTNKYAEGLPGKRYYGGCEYVDVVENLARERAKKLFGAE----HVNVQPHSGAQANMAAYMAFLEPGDTVLGMNLAHGGHLTH------GSPVNFSGKLYNFVSYGVEPDTEKINYEKVFELAYKHKPKMIVAGASAYPR 180          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA2_RHILO (Serine hydroxymethyltransferase 2 OS=Rhizobium loti GN=glyA2 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.651e-44
Identity = 91/188 (48.40%), Postives = 122/188 (64.89%), Query Frame = 3
Query:   87 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +G SSL  VD  +H+L+ +++R++   ++LIASENF S AV+EA GS   NKY+EG PG RYY GNE +DE+E L   R    F  +      NVQPYSGSPAN A Y A+L P D++MGL LP GGHLTHG+       ++ +   ++ +PY ++  T  IDYD+L E A   RPKLI  GG++YPR
Sbjct:    7 YGRSSLVQVDCRVHELLLRQRRQERTMLKLIASENFASSAVLEATGSIFANKYAEGYPGARYYAGNEIVDELETLAIERLKALFGSE----HANVQPYSGSPANQAVYRALLSPRDKVMGLPLPEGGHLTHGW------SVNFSGTDYQRVPYGLHDKTQQIDYDRLRETARRERPKLIWVGGTSYPR 184          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_THEPX (Serine hydroxymethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.686e-44
Identity = 93/183 (50.82%), Postives = 118/183 (64.48%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +   DPEI D IEKE  RQ   IELIASENF S AV+EA+GS LTNKY+EG P  RYYGG E++D  E L R R  + F  +      NVQP+SG+ AN AAY A+++P D ++G+DL  GGHLTH      G K++ +   +  + Y V   TGYIDYD++E  A   +PKLI+ G SAYPR
Sbjct:    6 IRKTDPEIADAIEKELIRQRNKIELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTH------GSKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPR 178          
The following BLAST results are available for this feature:
BLAST of CF833939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOB63.899e-4449.73Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_SOLUE5.092e-4452.17Serine hydroxymethyltransferase OS=Solibacter usit... [more]
GLYA_NITSB5.092e-4450.82Serine hydroxymethyltransferase OS=Nitratiruptor s... [more]
GLYA_HELMI5.092e-4448.69Serine hydroxymethyltransferase OS=Heliobacterium ... [more]
GLYA_CLOK55.092e-4449.73Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_CLOK15.092e-4449.73Serine hydroxymethyltransferase OS=Clostridium klu... [more]
GLYA_THETN6.651e-4450.27Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_CARHZ6.651e-4450.54Serine hydroxymethyltransferase OS=Carboxydothermu... [more]
GLYA2_RHILO6.651e-4448.40Serine hydroxymethyltransferase 2 OS=Rhizobium lot... [more]
GLYA_THEPX8.686e-4450.82Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04J05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833939 ID=CF833939; Name=CF833939; organism=Citrus sinensis; type=EST; length=654bp
TCTAAATCCACCCCTTTATACCCTTTTTTTCGTTTTCAGTGAATCCAGAA
AACCCAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATC
TCTTGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGC
GCCGACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCC
TTCGCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGA
GGGAATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGA
TCGAGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCC
ACCCAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTT
CGCCGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGG
ACTTGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGG
AAAAAGATATCGGCGACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGT
GAATTCGAGTACTGGGTATATTGATTACGATAAGTTGGAGGAGAAGGCGT
TGGATTTTAGGCCGAAGTTGATCATTTGCGGTGGGAGTGCGTATCCGAGG
GACT
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