CF833939

Overview
NameCF833939
Unique NameCF833939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_THEP3 (Serine hydroxymethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.686e-44
Identity = 93/183 (50.82%), Postives = 118/183 (64.48%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +   DPEI D IEKE  RQ   IELIASENF S AV+EA+GS LTNKY+EG P  RYYGG E++D  E L R R  + F  +      NVQP+SG+ AN AAY A+++P D ++G+DL  GGHLTH      G K++ +   +  + Y V   TGYIDYD++E  A   +PKLI+ G SAYPR
Sbjct:    6 IRKTDPEIADAIEKELIRQRNKIELIASENFVSRAVMEAMGSPLTNKYAEGYPNKRYYGGCEYVDIAEELARERLKKLFGAE----HANVQPHSGAQANMAAYFALIKPGDTVLGMDLAHGGHLTH------GSKVNFSGQIYNFVSYGVREDTGYIDYDEVERVAKKHKPKLIVAGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_THEM4 (Serine hydroxymethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glyA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.134e-43
Identity = 97/188 (51.60%), Postives = 124/188 (65.96%), Query Frame = 3
Query:   87 WGNSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            W N  ++ VDPEI+++I KE  RQ  G+ELIASENF S AVIEA+GS LTNKY+EG PG RYYGG E++D  E L R RA + F++       NVQP+SGS AN  AY AV EP D IMG+ L  GGHLTH      G  ++ +   +  + Y V+S T  I+YD++ E AL  +PK+II GGSAY +
Sbjct:    2 WEN--VKKVDPEIYEVILKEWDRQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQANMGAYFAVSEPGDTIMGMSLSHGGHLTH------GAPVNFSGRIYNVVSYGVDSETEVINYDEVRELALKHKPKIIIAGGSAYSK 177          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_METHJ (Serine hydroxymethyltransferase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=glyA PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.482e-43
Identity = 93/186 (50.00%), Postives = 118/186 (63.44%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 653
            S LET DPEI  +I+KE  RQ  G+ELIASEN  S AV+EA GS +TNKY+EG PG RYYGG EF D  ENL R R    F  +      NVQP+SGS AN A Y  VL+P D+I+ ++L  GGHL+H      G  ++ + I +ES  Y V+  T  +DY  + E A   +PK+I+CG SAYPR+
Sbjct:    2 SYLETTDPEIAAIIDKETNRQINGLELIASENVVSRAVLEASGSIMTNKYAEGYPGKRYYGGCEFHDMAENLARDRVCSLFGAE----HANVQPHSGSQANMAVYFTVLKPSDKILSMNLSQGGHLSH------GSPVNFSGIIYESHQYGVDLKTERMDYGTIAEMARTIKPKIIVCGASAYPRE 177          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_THEYD (Serine hydroxymethyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.935e-43
Identity = 92/184 (50.00%), Postives = 123/184 (66.85%), Query Frame = 3
Query:   99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            SL  VD EI+ LI +EK+R+   I +IASEN+ S AV+EA GS  TNKY+EG PG RYYGG E+ DE+E L + RA Q F+++     VNVQP+SG+ AN A Y A+L+P D IMG+ L  GGHL+H      G  ++ T   ++++ Y VN  TGYID D++   A + +PK+II G SAYPR
Sbjct:    5 SLREVDAEIYSLILQEKKRETNKILMIASENYASRAVMEAQGSLFTNKYAEGYPGRRYYGGCEYADEVERLAQERAKQLFNVE----HVNVQPHSGTQANMAVYFAMLQPGDTIMGMSLTHGGHLSH------GSPVNFTGKLYKTVFYGVNKETGYIDMDEVRRLAQEHKPKIIITGASAYPR 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_SYNJA (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain JA-3-3Ab) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.935e-43
Identity = 95/183 (51.91%), Postives = 120/183 (65.57%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L   DP ++ LI++E  RQ   +E+IASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFIDEIE L   RA Q F         NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTH      G  ++ +  +F  + Y V+  T  ID+D++ + A   RPKLIICG SAYPR
Sbjct:   11 LAETDPVVYRLIQQELNRQRDHLEMIASENFTSPAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDEIEQLAIDRAKQLFGAA----HANVQPHSGAQANFAVFLALLQPGDTIMGMDLAHGGHLTH------GSPVNVSGKWFRVVHYGVDPQTERIDFDQVRDLARQHRPKLIICGYSAYPR 183          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_PROM9 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9312) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.527e-43
Identity = 92/184 (50.00%), Postives = 123/184 (66.85%), Query Frame = 3
Query:   99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +L+  DP I + I  EK RQ   +ELIASENF S AV++A GS LTNKY+EG+P  RYYGG EF+DEIE L   RA + F+     W  NVQP+SG+ AN A + ++L+P D IMG+DL  GGHLTH      G  ++ +  +F ++ Y VN  T  +++D++ E AL+ +PKLIICG SAYPR
Sbjct:    6 NLKKSDPVISNFINSEKNRQETHLELIASENFASIAVMQAQGSVLTNKYAEGLPQKRYYGGCEFVDEIEELAIQRAKKLFN---ANW-ANVQPHSGAQANAAVFLSLLQPGDTIMGMDLSHGGHLTH------GSPVNMSGKWFNAVHYGVNKETSELNFDEIREIALETKPKLIICGYSAYPR 179          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_PROM2 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9215) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.527e-43
Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 3
Query:   99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +L+  DP I + I  EK RQ   +ELIASENF S AV++A GS LTNKY+EG+P  RYYGG EF+DEIE L  +RA + F+     W  NVQP+SG+ AN A + ++L+P D IMG+DL  GGHLTH      G  ++ +  +F ++ Y VN  T  +++D++ E AL+ +PKLIICG SAYPR
Sbjct:    6 NLKDSDPVISNFINSEKNRQETHLELIASENFASIAVMQAQGSVLTNKYAEGLPQKRYYGGCEFVDEIEELAINRAKKLFN---ANW-ANVQPHSGAQANAAVFLSLLKPGDTIMGMDLSHGGHLTH------GSPVNMSGKWFNAVHYGVNKETSELNFDEIREIALETKPKLIICGYSAYPR 179          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_PROM0 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9301) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.527e-43
Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 3
Query:   99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +L+  DP I + I+ EK RQ   +ELIASENF S AV+EA GS LTNKY+EG+P  RYYGG EF+D+IE L   RA + F+     W  NVQP+SG+ AN A + ++L+P D IMG+DL  GGHLTH      G  ++ +  +F ++ Y VN  T  +++D++ E AL+ +PKLIICG SAYPR
Sbjct:    6 NLKESDPVISNFIKSEKNRQETHLELIASENFASIAVMEAQGSVLTNKYAEGLPQKRYYGGCEFVDQIEELAIQRAKKLFN---ANW-ANVQPHSGAQANAAVFLSLLKPGDTIMGMDLSHGGHLTH------GSPVNMSGKWFNAVHYGVNKETSELNFDEIREIALETKPKLIICGYSAYPR 179          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_MYCA5 (Serine hydroxymethyltransferase OS=Mycoplasma arthritidis (strain 158L3-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.527e-43
Identity = 95/184 (51.63%), Postives = 121/184 (65.76%), Query Frame = 3
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 644
            N  +   D +I DLI KE  RQ   IELIASEN+ S  V++A GS+LTNKY EG PG RYYGG EF+DEIE + + RA + F+        NVQPYSGS AN A Y A+L P D ++GL L SGGHLTHGY      +IS + I+++S  Y VN   G +DYD++ + A + +PK+IICG SAY
Sbjct:    2 NKKVTLHDQDIADLINKESHRQEEHIELIASENYVSEDVMKAAGSSLTNKYGEGYPGKRYYGGCEFVDEIEKIAQERACKLFNAK----YANVQPYSGSVANAAIYMALLNPGDSVLGLSLDSGGHLTHGY------RISFSGIFYKSYTYTVNQD-GVLDYDEILKIAQEVKPKMIICGYSAY 174          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_ANAVT (Serine hydroxymethyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glyA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.527e-43
Identity = 95/183 (51.91%), Postives = 119/183 (65.03%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            L   DP I  LI +E +RQ   +ELIASENFTS AV+ A GS LTNKY+EG+PG RYYGG EFID+IE +   RA Q F         NVQP+SG+ ANFA +  +L P D+IMG+DL  GGHLTH      G  ++ +  +F+   Y V+  T  +DYD++ E AL  RPKL+ICG SAYPR
Sbjct:    9 LTNSDPAIAGLINQELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEFIDKIEQIAIDRAKQLFGAA----HANVQPHSGAQANFAVFLTLLAPGDKIMGMDLSHGGHLTH------GSPVNVSGKWFQVCHYGVSQQTEQLDYDQIRELALRERPKLLICGYSAYPR 181          
The following BLAST results are available for this feature:
BLAST of CF833939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THEP38.686e-4450.82Serine hydroxymethyltransferase OS=Thermoanaerobac... [more]
GLYA_THEM41.134e-4351.60Serine hydroxymethyltransferase OS=Thermosipho mel... [more]
GLYA_METHJ1.482e-4350.00Serine hydroxymethyltransferase OS=Methanospirillu... [more]
GLYA_THEYD1.935e-4350.00Serine hydroxymethyltransferase OS=Thermodesulfovi... [more]
GLYA_SYNJA1.935e-4351.91Serine hydroxymethyltransferase OS=Synechococcus s... [more]
GLYA_PROM92.527e-4350.00Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PROM22.527e-4350.00Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_PROM02.527e-4350.00Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_MYCA52.527e-4351.63Serine hydroxymethyltransferase OS=Mycoplasma arth... [more]
GLYA_ANAVT2.527e-4351.91Serine hydroxymethyltransferase OS=Anabaena variab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04J05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833939 ID=CF833939; Name=CF833939; organism=Citrus sinensis; type=EST; length=654bp
TCTAAATCCACCCCTTTATACCCTTTTTTTCGTTTTCAGTGAATCCAGAA
AACCCAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATC
TCTTGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGC
GCCGACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCC
TTCGCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGA
GGGAATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGA
TCGAGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCC
ACCCAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTT
CGCCGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGG
ACTTGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGG
AAAAAGATATCGGCGACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGT
GAATTCGAGTACTGGGTATATTGATTACGATAAGTTGGAGGAGAAGGCGT
TGGATTTTAGGCCGAAGTTGATCATTTGCGGTGGGAGTGCGTATCCGAGG
GACT
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