CF833939

Overview
NameCF833939
Unique NameCF833939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJE (Serine hydroxymethyltransferase OS=Campylobacter jejuni GN=glyA PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43
Identity = 96/184 (52.17%), Postives = 117/184 (63.59%), Query Frame = 3
Query:   99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            SLE  D EI DL  KE  RQC G+E+IASENFT   V+E +GS LTNKY+EG PG RYYGG EF+DEIE L   R  + F+        NVQP SGS AN   Y A++ P D+I+G+DL  GGHLTH      G K+S++   +ES  Y V    G IDY+K+ E A   +PKLI+CG SAY R
Sbjct:    2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTH------GAKVSSSGKMYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGASAYAR 174          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJD (Serine hydroxymethyltransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43
Identity = 96/184 (52.17%), Postives = 117/184 (63.59%), Query Frame = 3
Query:   99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            SLE  D EI DL  KE  RQC G+E+IASENFT   V+E +GS LTNKY+EG PG RYYGG EF+DEIE L   R  + F+        NVQP SGS AN   Y A++ P D+I+G+DL  GGHLTH      G K+S++   +ES  Y V    G IDY+K+ E A   +PKLI+CG SAY R
Sbjct:    2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLTHGGHLTH------GAKVSSSGKMYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGASAYAR 174          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJ8 (Serine hydroxymethyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43
Identity = 96/184 (52.17%), Postives = 117/184 (63.59%), Query Frame = 3
Query:   99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            SLE  D EI DL  KE  RQC G+E+IASENFT   V+E +GS LTNKY+EG PG RYYGG EF+DEIE L   R  + F+        NVQP SGS AN   Y A++ P D+I+G+DL  GGHLTH      G K+S++   +ES  Y V    G IDY+K+ E A   +PKLI+CG SAY R
Sbjct:    2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVIGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTH------GAKVSSSGKMYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGASAYAR 174          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.630e-43
Identity = 96/187 (51.34%), Postives = 120/187 (64.17%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE-PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 653
            S L T DPEI +LIE E+ RQ  G+ELIASEN  S AV+EA+GS LTNKY+EG PG RYYGG EF D IENL R R  Q F+ +      NVQP+SG+ AN A Y +V+E   DR+M + L  GGHL+H      G  +S +   +E   Y V+  T  IDY  +EE A   +PK+I+CG SAYPR+
Sbjct:    2 SYLATADPEIAELIECERLRQVNGLELIASENLVSKAVLEAMGSILTNKYAEGYPGKRYYGGCEFHDRIENLARDRLKQLFNAE----HANVQPHSGTQANMAVYFSVMECGKDRMMSMSLTQGGHLSH------GSPVSFSGKMYEVSQYGVDLKTELIDYGAVEEMAKKVKPKVIVCGASAYPRE 178          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_THENN (Serine hydroxymethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43
Identity = 92/183 (50.27%), Postives = 120/183 (65.57%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            ++ VDPEI++++  E RRQ  G+ELIASENF S AVIE +GS LTNKY+EG PG RYYGG E++D  E L   RA + F  +      NVQP+SGS AN A Y A+ +P D IMG+ L  GGHLTH      G  ++ +   F+ + Y VN  T  IDYD++ + AL+ RPK+I+ GGSAY R
Sbjct:    5 VKKVDPEIYEVLVNELRRQEYGLELIASENFASLAVIETMGSVLTNKYAEGYPGRRYYGGCEWVDRAEELAIERAKKLFGAE----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTH------GAPVNFSGRIFKVVHYGVNLETETIDYDEVRKLALEHRPKIIVAGGSAYAR 177          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43
Identity = 92/185 (49.73%), Postives = 120/185 (64.86%), Query Frame = 3
Query:   96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            S LET DP + ++I +E  RQ   +ELIASENF S AV+EA GS LTNKY+EG PG RYYGG   +D +ENL   RA + F  D     VNVQP+SGS AN A Y +VL+P D ++G++L  GGHLTH      G  ++ +   F  +PY V+  T  IDY++ E  AL+ +PK+I+ G SAYPR
Sbjct:    2 SVLETFDPAVAEVIRQETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTH------GSPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPR 176          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43
Identity = 96/181 (53.04%), Postives = 118/181 (65.19%), Query Frame = 3
Query:  102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 644
            L   D E+ + I  E  RQ   +ELIASENFTS AV++A GS +TNKY+EG PG RYYGG EF+D  ENL R RA + F        VNVQP+SGS AN A   +VL+P DRIMGLDL  GGHLTH      G  ++ +   F++  Y V+  TG ID +++EE AL+ RPKLIICG SAY
Sbjct:    6 LRMQDKEVFEAIAGETLRQTETLELIASENFTSRAVMQACGSLMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCQ----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTH------GSPVNFSGQLFDAHSYGVDRETGCIDMNRVEELALEVRPKLIICGASAY 176          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_WOLSU (Serine hydroxymethyltransferase OS=Wolinella succinogenes GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.603e-43
Identity = 95/187 (50.80%), Postives = 124/187 (66.31%), Query Frame = 3
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 653
            N +LET D EI DLI +E  RQ   +E+IASENFT  AV+EA+GS LTNKY+EG P  RYYGG EF+D +E +   RA + F         NVQP++GS AN A Y A+L+P+D+I+G+DL  GGHLTH      G K+S T   ++S  Y V    GYI+YDK+EE A   +P++I+CG SAY R+
Sbjct:    2 NYALETNDKEIFDLIHEELDRQNTHLEMIASENFTFPAVMEAMGSVLTNKYAEGYPYKRYYGGCEFVDRVEEIAIERAKKLFGCG----FANVQPHAGSQANVAVYNALLKPYDKILGMDLSHGGHLTH------GAKVSVTGQTYQSFFYGVELD-GYINYDKVEEIAKIVKPQMIVCGFSAYARE 177          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_OENOB (Serine hydroxymethyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.603e-43
Identity = 92/180 (51.11%), Postives = 118/180 (65.56%), Query Frame = 3
Query:  111 VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            +DP++   +  E+ RQ   IEL+ASENF S AV +A GS LTNKYSEG PG RYYGGNE+ID  ENL   RA + F +       NVQP+SGS ANF AY A L P D+I+G++L SGGHLTH      G  +S +   +E+  YKV+S T  +DYD + ++A +F+P LII G SAY R
Sbjct:    6 LDPQLAKAVSGEEERQRHNIELVASENFVSKAVRQAQGSVLTNKYSEGYPGKRYYGGNEYIDIAENLAIERAKELFGVS----YANVQPHSGSSANFEAYMAFLHPGDKILGMNLDSGGHLTH------GASVSFSGKMYEAQSYKVDSETELLDYDAILKQAKEFKPNLIIAGASAYSR 175          
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPX (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH8102) GN=glyA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.254e-42
Identity = 93/186 (50.00%), Postives = 120/186 (64.52%), Query Frame = 3
Query:   93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650
            N  L   DP I  LIEKE++RQ   +ELIASENF S AV++A GS LTNKY+EG+P  RYYGG E +D IE L   RA + F      W  NVQP+SG+ ANFA + A+L+P D IMGLDL  GGHLTH      G  ++ +  +F  + Y V+  T  +D + + + AL+ +PKLI+CG SAYPR
Sbjct:   10 NKGLAAADPAIAALIEKEQQRQETHLELIASENFASRAVMDAQGSVLTNKYAEGLPSKRYYGGCEHVDAIEELAIERAKELF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTIMGLDLSHGGHLTH------GSPVNVSGKWFNVVQYGVDRETQRLDMEAIRQLALEHKPKLIVCGFSAYPR 185          
The following BLAST results are available for this feature:
BLAST of CF833939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CAMJE4.311e-4352.17Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA_CAMJD4.311e-4352.17Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA_CAMJ84.311e-4352.17Serine hydroxymethyltransferase OS=Campylobacter j... [more]
GLYA_METPE5.630e-4351.34Serine hydroxymethyltransferase OS=Methanosphaerul... [more]
GLYA_THENN7.353e-4350.27Serine hydroxymethyltransferase OS=Thermotoga neap... [more]
GLYA_GEOBB7.353e-4349.73Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_CHLL27.353e-4353.04Serine hydroxymethyltransferase OS=Chlorobium limi... [more]
GLYA_WOLSU9.603e-4350.80Serine hydroxymethyltransferase OS=Wolinella succi... [more]
GLYA_OENOB9.603e-4351.11Serine hydroxymethyltransferase OS=Oenococcus oeni... [more]
GLYA_SYNPX1.254e-4250.00Serine hydroxymethyltransferase OS=Synechococcus s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04J05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833939 ID=CF833939; Name=CF833939; organism=Citrus sinensis; type=EST; length=654bp
TCTAAATCCACCCCTTTATACCCTTTTTTTCGTTTTCAGTGAATCCAGAA
AACCCAAAAAAAGAAAAAATGGATCCAGTGAACGAGTGGGGCAACTCATC
TCTTGAAACCGTGGACCCAGAAATTCACGACCTGATCGAGAAAGAGAAGC
GCCGACAATGCCGCGGCATCGAGCTCATCGCCTCCGAGAACTTCACCTCC
TTCGCCGTTATCGAAGCCCTCGGCAGCGCCCTCACCAACAAATACTCAGA
GGGAATGCCCGGCAACCGTTACTACGGAGGCAACGAATTCATCGACGAGA
TCGAGAATCTCTGCCGGTCGAGAGCTTTACAAACTTTCCATTTGGACCCC
ACCCAGTGGGGTGTCAACGTTCAGCCTTACTCCGGCTCGCCGGCCAACTT
CGCCGCTTACACGGCGGTGCTCGAGCCTCATGACCGTATCATGGGGCTGG
ACTTGCCGTCCGGAGGGCATTTGACTCATGGGTATTACACTTCTGGCGGG
AAAAAGATATCGGCGACTTCGATTTACTTCGAGAGCTTGCCGTACAAGGT
GAATTCGAGTACTGGGTATATTGATTACGATAAGTTGGAGGAGAAGGCGT
TGGATTTTAGGCCGAAGTTGATCATTTGCGGTGGGAGTGCGTATCCGAGG
GACT
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