CF833939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJE (Serine hydroxymethyltransferase OS=Campylobacter jejuni GN=glyA PE=1 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43 Identity = 96/184 (52.17%), Postives = 117/184 (63.59%), Query Frame = 3 Query: 99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650 SLE D EI DL KE RQC G+E+IASENFT V+E +GS LTNKY+EG PG RYYGG EF+DEIE L R + F+ NVQP SGS AN Y A++ P D+I+G+DL GGHLTH G K+S++ +ES Y V G IDY+K+ E A +PKLI+CG SAY R Sbjct: 2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTH------GAKVSSSGKMYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGASAYAR 174
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJD (Serine hydroxymethyltransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=glyA PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43 Identity = 96/184 (52.17%), Postives = 117/184 (63.59%), Query Frame = 3 Query: 99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650 SLE D EI DL KE RQC G+E+IASENFT V+E +GS LTNKY+EG PG RYYGG EF+DEIE L R + F+ NVQP SGS AN Y A++ P D+I+G+DL GGHLTH G K+S++ +ES Y V G IDY+K+ E A +PKLI+CG SAY R Sbjct: 2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLTHGGHLTH------GAKVSSSGKMYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGASAYAR 174
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CAMJ8 (Serine hydroxymethyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=glyA PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43 Identity = 96/184 (52.17%), Postives = 117/184 (63.59%), Query Frame = 3 Query: 99 SLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650 SLE D EI DL KE RQC G+E+IASENFT V+E +GS LTNKY+EG PG RYYGG EF+DEIE L R + F+ NVQP SGS AN Y A++ P D+I+G+DL GGHLTH G K+S++ +ES Y V G IDY+K+ E A +PKLI+CG SAY R Sbjct: 2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVIGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCK----FANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTH------GAKVSSSGKMYESCFYGVELD-GRIDYEKVREIAKKEKPKLIVCGASAYAR 174
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 5.630e-43 Identity = 96/187 (51.34%), Postives = 120/187 (64.17%), Query Frame = 3 Query: 96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLE-PHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 653 S L T DPEI +LIE E+ RQ G+ELIASEN S AV+EA+GS LTNKY+EG PG RYYGG EF D IENL R R Q F+ + NVQP+SG+ AN A Y +V+E DR+M + L GGHL+H G +S + +E Y V+ T IDY +EE A +PK+I+CG SAYPR+ Sbjct: 2 SYLATADPEIAELIECERLRQVNGLELIASENLVSKAVLEAMGSILTNKYAEGYPGKRYYGGCEFHDRIENLARDRLKQLFNAE----HANVQPHSGTQANMAVYFSVMECGKDRMMSMSLTQGGHLSH------GSPVSFSGKMYEVSQYGVDLKTELIDYGAVEEMAKKVKPKVIVCGASAYPRE 178
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_THENN (Serine hydroxymethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=glyA PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43 Identity = 92/183 (50.27%), Postives = 120/183 (65.57%), Query Frame = 3 Query: 102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650 ++ VDPEI++++ E RRQ G+ELIASENF S AVIE +GS LTNKY+EG PG RYYGG E++D E L RA + F + NVQP+SGS AN A Y A+ +P D IMG+ L GGHLTH G ++ + F+ + Y VN T IDYD++ + AL+ RPK+I+ GGSAY R Sbjct: 5 VKKVDPEIYEVLVNELRRQEYGLELIASENFASLAVIETMGSVLTNKYAEGYPGRRYYGGCEWVDRAEELAIERAKKLFGAE----FANVQPHSGSQANMAVYLALAQPGDTIMGMSLSHGGHLTH------GAPVNFSGRIFKVVHYGVNLETETIDYDEVRKLALEHRPKIIVAGGSAYAR 177
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43 Identity = 92/185 (49.73%), Postives = 120/185 (64.86%), Query Frame = 3 Query: 96 SSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650 S LET DP + ++I +E RQ +ELIASENF S AV+EA GS LTNKY+EG PG RYYGG +D +ENL RA + F D VNVQP+SGS AN A Y +VL+P D ++G++L GGHLTH G ++ + F +PY V+ T IDY++ E AL+ +PK+I+ G SAYPR Sbjct: 2 SVLETFDPAVAEVIRQETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAVYFSVLKPGDTVLGMNLAHGGHLTH------GSPVNFSGKLFNIVPYGVSKETQTIDYEETERLALEHKPKMIVVGASAYPR 176
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_CHLL2 (Serine hydroxymethyltransferase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=glyA PE=3 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43 Identity = 96/181 (53.04%), Postives = 118/181 (65.19%), Query Frame = 3 Query: 102 LETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAY 644 L D E+ + I E RQ +ELIASENFTS AV++A GS +TNKY+EG PG RYYGG EF+D ENL R RA + F VNVQP+SGS AN A +VL+P DRIMGLDL GGHLTH G ++ + F++ Y V+ TG ID +++EE AL+ RPKLIICG SAY Sbjct: 6 LRMQDKEVFEAIAGETLRQTETLELIASENFTSRAVMQACGSLMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCQ----YVNVQPHSGSSANMAVLFSVLKPGDRIMGLDLSHGGHLTH------GSPVNFSGQLFDAHSYGVDRETGCIDMNRVEELALEVRPKLIICGASAY 176
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_WOLSU (Serine hydroxymethyltransferase OS=Wolinella succinogenes GN=glyA PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 9.603e-43 Identity = 95/187 (50.80%), Postives = 124/187 (66.31%), Query Frame = 3 Query: 93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPRD 653 N +LET D EI DLI +E RQ +E+IASENFT AV+EA+GS LTNKY+EG P RYYGG EF+D +E + RA + F NVQP++GS AN A Y A+L+P+D+I+G+DL GGHLTH G K+S T ++S Y V GYI+YDK+EE A +P++I+CG SAY R+ Sbjct: 2 NYALETNDKEIFDLIHEELDRQNTHLEMIASENFTFPAVMEAMGSVLTNKYAEGYPYKRYYGGCEFVDRVEEIAIERAKKLFGCG----FANVQPHAGSQANVAVYNALLKPYDKILGMDLSHGGHLTH------GAKVSVTGQTYQSFFYGVELD-GYINYDKVEEIAKIVKPQMIVCGFSAYARE 177
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_OENOB (Serine hydroxymethyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=glyA PE=3 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 9.603e-43 Identity = 92/180 (51.11%), Postives = 118/180 (65.56%), Query Frame = 3 Query: 111 VDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650 +DP++ + E+ RQ IEL+ASENF S AV +A GS LTNKYSEG PG RYYGGNE+ID ENL RA + F + NVQP+SGS ANF AY A L P D+I+G++L SGGHLTH G +S + +E+ YKV+S T +DYD + ++A +F+P LII G SAY R Sbjct: 6 LDPQLAKAVSGEEERQRHNIELVASENFVSKAVRQAQGSVLTNKYSEGYPGKRYYGGNEYIDIAENLAIERAKELFGVS----YANVQPHSGSSANFEAYMAFLHPGDKILGMNLDSGGHLTH------GASVSFSGKMYEAQSYKVDSETELLDYDAILKQAKEFKPNLIIAGASAYSR 175
BLAST of CF833939 vs. ExPASy Swiss-Prot
Match: GLYA_SYNPX (Serine hydroxymethyltransferase OS=Synechococcus sp. (strain WH8102) GN=glyA PE=3 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.254e-42 Identity = 93/186 (50.00%), Postives = 120/186 (64.52%), Query Frame = 3 Query: 93 NSSLETVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSSTGYIDYDKLEEKALDFRPKLIICGGSAYPR 650 N L DP I LIEKE++RQ +ELIASENF S AV++A GS LTNKY+EG+P RYYGG E +D IE L RA + F W NVQP+SG+ ANFA + A+L+P D IMGLDL GGHLTH G ++ + +F + Y V+ T +D + + + AL+ +PKLI+CG SAYPR Sbjct: 10 NKGLAAADPAIAALIEKEQQRQETHLELIASENFASRAVMDAQGSVLTNKYAEGLPSKRYYGGCEHVDAIEELAIERAKELF---GAAW-ANVQPHSGAQANFAVFLALLQPGDTIMGLDLSHGGHLTH------GSPVNVSGKWFNVVQYGVDRETQRLDMEAIRQLALEHKPKLIVCGFSAYPR 185 The following BLAST results are available for this feature:
BLAST of CF833939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF833939 ID=CF833939; Name=CF833939; organism=Citrus sinensis; type=EST; length=654bpback to top |