CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACSU (Nucleoside diphosphate kinase OS=Bacillus subtilis GN=ndk PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 4.231e-42
Identity = 81/148 (54.73%), Postives = 111/148 (75.00%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TFI +KPDGVQR LI +I+SRFERKG +L   K++  +++ A+KHY + + +PFF  L EF++SGPV AMVWEGE VI   R+LIG T+P+++ PGTIRGD  + VG+NIIHGSD  E+A+ EI ++FK E+LV+Y      W+Y
Sbjct:    2 MEKTFIMVKPDGVQRQLIGDILSRFERKGLQLAGAKLMRVTEQMAEKHYAEHQGKPFFGELVEFITSGPVFAMVWEGENVIEVTRQLIGKTNPKEALPGTIRGDYGMFVGKNIIHGSDSLESAEREINIFFKNEELVSYQQLMAGWIY 149          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACC1 (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 10987) GN=ndk PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 4.231e-42
Identity = 77/148 (52.03%), Postives = 109/148 (73.65%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P ++ PGTIRGD  V V +NIIHGSD  E+A+ EI ++FK E+LV+Y+    +W+Y
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACHK (Nucleoside diphosphate kinase OS=Bacillus thuringiensis subsp. konkukian GN=ndk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.526e-42
Identity = 77/148 (52.03%), Postives = 109/148 (73.65%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P ++ PGTIRGD  V V +NIIHGSD  E+A+ EI ++FK E+LV+Y+    +W+Y
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACCZ (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ZK / E33L) GN=ndk PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.526e-42
Identity = 77/148 (52.03%), Postives = 109/148 (73.65%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P ++ PGTIRGD  V V +NIIHGSD  E+A+ EI ++FK E+LV+Y+    +W+Y
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACAN (Nucleoside diphosphate kinase OS=Bacillus anthracis GN=ndk PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.526e-42
Identity = 77/148 (52.03%), Postives = 109/148 (73.65%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY +  E+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P ++ PGTIRGD  V V +NIIHGSD  E+A+ EI ++FK E+LV+Y+    +W+Y
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHTEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PELTS (Nucleoside diphosphate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ndk PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 76/149 (51.01%), Postives = 111/149 (74.50%), Query Frame = -3
Query:  186 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 632
            MERT++ IKPDGVQRGL+ EII+RFE++GFK+V +K++   +E A+KHY + K +PFF  L  +++S PV+AMV EG+  +   R+++GATDP K+ PGTIRG   + +GRN+IHGSD P +A+ EI L+F  ++L+ Y    ++WVYE
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIIARFEKRGFKIVGLKMIRIGRELAEKHYGEHKGKPFFEPLVGYITSSPVVAMVIEGKNAVGAAREMMGATDPLKAAPGTIRGTYGIDIGRNVIHGSDSPASAQREIALFFSADELMEYGLELDRWVYE 149          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_MACCJ (Nucleoside diphosphate kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=ndk PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.608e-41
Identity = 79/148 (53.38%), Postives = 104/148 (70.27%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TF+ IKPDGV RGLI EI+ R E KG K+V  K++  S++ A+ HY +  E+PFF  L EF++SGPV AMV EG+ V+  GR L+G T+P +S PGTIRGD  + VG+NIIHGSD   +A  EI LWFK E++++Y      WVY
Sbjct:    1 MEKTFLMIKPDGVGRGLIGEIVKRIENKGIKVVGAKLMTVSEDLAKTHYGEHSEKPFFGELVEFITSGPVFAMVLEGDNVVEIGRTLVGKTNPAESAPGTIRGDFGMTVGKNIIHGSDSVASADKEIALWFKEEEILSYDLVTSAWVY 148          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACLD (Nucleoside diphosphate kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=ndk PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.742e-41
Identity = 79/148 (53.38%), Postives = 107/148 (72.30%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TF+ +KPDGVQR LI EI+ RFERKG +L+  K++  S+E A +HY +   +PFF  L +F++SGPV AMVWEGE  I   R+LIG T+P+++ PGTIRGD  + VG+NIIHGSD PE+A  EI L+FK ++LV       +W+Y
Sbjct:    1 MEKTFVMVKPDGVQRQLIGEILLRFERKGLQLIGAKLMKVSEETAGEHYKEHNGKPFFGELVDFITSGPVFAMVWEGEDAIAVARQLIGKTNPKEALPGTIRGDFGMFVGKNIIHGSDSPESAAREINLFFKEDELVEDEKLMNQWIY 148          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK8_HUMAN (Putative nucleoside diphosphate kinase OS=Homo sapiens GN=NME2P1 PE=5 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.582e-41
Identity = 79/137 (57.66%), Postives = 106/137 (77.37%), Query Frame = -3
Query:  186 VQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 596
            +Q GL+ +II RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL ++++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGRNIIHGSD  ++A+ EI L FKPE+LV+Y S A  WVYE
Sbjct:    1 MQCGLVGKIIKRFEQKGFRLVAMKFLPASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLRFKPEELVDYKSCAHDWVYE 137          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_STAS1 (Nucleoside diphosphate kinase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=ndk PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.678e-41
Identity = 80/149 (53.69%), Postives = 103/149 (69.13%), Query Frame = -3
Query:  186 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 632
            MERTF+ IKPD VQR LI EIISR ERKG KLV  K +   +  A++HY +  ++PF+  L  F++S PV AMV EGE  +   R +IG T+P ++ PGTIRGDL + VGRNIIHGSD  E+A  EI LWFK ++L  Y+ + E W+YE
Sbjct:    1 MERTFLMIKPDAVQRNLIGEIISRIERKGLKLVGGKFMTVPQSLAEEHYAEHTDKPFYKHLISFITSAPVFAMVVEGEDAVHVARHIIGKTNPSEATPGTIRGDLGLTVGRNIIHGSDSVESANKEINLWFKADELSEYSESRESWLYE 149          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_BACSU4.231e-4254.73Nucleoside diphosphate kinase OS=Bacillus subtilis... [more]
NDK_BACC14.231e-4252.03Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACHK5.526e-4252.03Nucleoside diphosphate kinase OS=Bacillus thuringi... [more]
NDK_BACCZ5.526e-4252.03Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_BACAN5.526e-4252.03Nucleoside diphosphate kinase OS=Bacillus anthraci... [more]
NDK_PELTS9.425e-4251.01Nucleoside diphosphate kinase OS=Pelotomaculum the... [more]
NDK_MACCJ1.608e-4153.38Nucleoside diphosphate kinase OS=Macrococcus caseo... [more]
NDK_BACLD2.742e-4153.38Nucleoside diphosphate kinase OS=Bacillus lichenif... [more]
NDK8_HUMAN3.582e-4157.66Putative nucleoside diphosphate kinase OS=Homo sap... [more]
NDK_STAS14.678e-4153.69Nucleoside diphosphate kinase OS=Staphylococcus sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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