CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_STRPN (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.557e-27
Identity = 62/137 (45.26%), Postives = 89/137 (64.96%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVP-SKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVG-----RNIIHGSDGPETAKDEIKLWF 632
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGPV+  V  G  VI   R ++GAT P+++ PGTIRGD A   G     +N++HGSD  E+AK EI LWF
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEIIQNVVHGSDSEESAKREIALWF 137          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_STRPI (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.557e-27
Identity = 62/137 (45.26%), Postives = 89/137 (64.96%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVP-SKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVG-----RNIIHGSDGPETAKDEIKLWF 632
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGPV+  V  G  VI   R ++GAT P+++ PGTIRGD A   G     +N++HGSD  E+AK EI LWF
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEIIQNVVHGSDSEESAKREIALWF 137          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_STRP2 (Nucleoside diphosphate kinase OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.557e-27
Identity = 62/137 (45.26%), Postives = 89/137 (64.96%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVP-SKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVG-----RNIIHGSDGPETAKDEIKLWF 632
            ME+TF  IKPDGV+RGL+ E++ R E++GF +  ++     S+E   +HY DL  + F+  + EF++SGPV+  V  G  VI   R ++GAT P+++ PGTIRGD A   G     +N++HGSD  E+AK EI LWF
Sbjct:    1 MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEIIQNVVHGSDSEESAKREIALWF 137          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PHOPR (Nucleoside diphosphate kinase OS=Photobacterium profundum GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.557e-27
Identity = 63/136 (46.32%), Postives = 87/136 (63.97%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +E+TF  IKPD V+R LI  I  RFE  G K+VA K+V      AQ  Y + +E+PFFN L EF++SGPV+  V EGE  I   R+L+G T+P+ +  GTIR D A+ +  N +HGSD PE+A  EI  +F  +++
Sbjct:    3 IEKTFSIIKPDAVKRNLIGAIYQRFENAGLKIVASKMVHLDATKAQGFYAEHEEKPFFNELVEFMTSGPVMVQVLEGEDAIHRYRELMGTTNPENAACGTIRSDFALSMRYNSVHGSDSPESAAREIAYFFTEDEI 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_DELAS (Nucleoside diphosphate kinase OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.557e-27
Identity = 62/131 (47.33%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 632
            +ERT   IKPD V + +I +I +RFE  G K++A K+V  S+  A++ Y   KERPFF  L +F+ SGPV+    EGE  I   R+L+GATDP+K+E GTIR D A  +  N +HGSD  ETA  E+  +F
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEGAGLKVIAAKMVHLSRGEAEQFYGVHKERPFFKDLVDFMVSGPVMIQALEGENAILKNRELMGATDPKKAEKGTIRADFADSIDANAVHGSDAAETAAVEVAFFF 133          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_ACISJ (Nucleoside diphosphate kinase OS=Acidovorax sp. (strain JS42) GN=ndk PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.557e-27
Identity = 59/131 (45.04%), Postives = 84/131 (64.12%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 632
            +ERT   IKPD V + +I +I +RFE  G K+ A +++  S+  A++ Y   KERPFF  L +F+ SGPV+    EGE  +   R+L+GATDP+K+ PGTIR D A  +  N +HGSD  ETA+ E+  +F
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYARFEAAGLKIAAARMIHLSRAEAEQFYAVHKERPFFKDLVDFMISGPVMVQALEGENAVLKNRELMGATDPKKAAPGTIRADFADSIDANAVHGSDAAETAQVEVAFFF 133          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_STRGG (Nucleoside diphosphate kinase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.564e-27
Identity = 60/131 (45.80%), Postives = 86/131 (65.65%), Query Frame = -3
Query:  240 ERTFIAIKPDGVQRGLISEIISRFERKG-FKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 629
            +RT + +KPD V+RGLI EI+ R ERK  +++ A+++        ++HY + K RPF+  L EF+ SGPV+A+V EGE VI   R L G TDP  + PG+IRGD   +   N+IH SD  E+A+ E+KL+F
Sbjct:    3 QRTLVLLKPDAVRRGLIGEIVGRIERKADWRITALELRTLDHGTLEQHYGEHKGRPFYEPLMEFMQSGPVVALVAEGERVIEGVRTLAGPTDPIAAAPGSIRGDFGTITRENLIHASDSEESAERELKLFF 133          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_LARHH (Nucleoside diphosphate kinase OS=Laribacter hongkongensis (strain HLHK9) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.564e-27
Identity = 62/136 (45.59%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERT   +KPD V + +I +I  RFE  G K+VA K+   S+  A+  Y   KERPFFN L EF+ SGPV+  V EGE  +   R+L+GATDP+K++ GTIR D A  +  N +HGSD  E A  EI  +F   ++
Sbjct:    3 IERTLSIVKPDAVAKNVIGKIYDRFESNGLKIVAAKMKHLSRREAEGFYAVHKERPFFNDLVEFMISGPVMVQVLEGENAVLKNRELMGATDPKKADAGTIRADFAESIDANAVHGSDSLENAAIEIAYFFSATEV 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_COLP3 (Nucleoside diphosphate kinase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.564e-27
Identity = 60/136 (44.12%), Postives = 87/136 (63.97%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  +KPD V +  I +I +RFE  G K+VA K++  S+E A+  Y +  ERPFF  L EF++SGPV+  V EGE  +   R+++GAT+P ++  GTIR DLA  +  N  HGSD  E+A  EI  +F  +++
Sbjct:    3 IERTFSIVKPDAVAKNFIGQIYNRFETAGLKIVASKMIHLSQEKAEGFYAEHSERPFFGALVEFMTSGPVMVQVLEGENAVLKNREIMGATNPAEALAGTIRADLADSIDENAAHGSDALESAAREIAYFFSDDEI 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BURVG (Nucleoside diphosphate kinase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.564e-27
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 632
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+K Y     RPFF  L +F+ SGPV+  V EGEG I   R L+GATDP+K+E GTIR D A  +  N +HGSD  ETA  EI  +F
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVASRMAHLSRADAEKFYAVHAARPFFKDLVDFMISGPVMIQVLEGEGAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAAETAAVEIAFFF 133          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_STRPN6.557e-2745.26Nucleoside diphosphate kinase OS=Streptococcus pne... [more]
NDK_STRPI6.557e-2745.26Nucleoside diphosphate kinase OS=Streptococcus pne... [more]
NDK_STRP26.557e-2745.26Nucleoside diphosphate kinase OS=Streptococcus pne... [more]
NDK_PHOPR6.557e-2746.32Nucleoside diphosphate kinase OS=Photobacterium pr... [more]
NDK_DELAS6.557e-2747.33Nucleoside diphosphate kinase OS=Delftia acidovora... [more]
NDK_ACISJ6.557e-2745.04Nucleoside diphosphate kinase OS=Acidovorax sp. (s... [more]
NDK_STRGG8.564e-2745.80Nucleoside diphosphate kinase OS=Streptomyces gris... [more]
NDK_LARHH8.564e-2745.59Nucleoside diphosphate kinase OS=Laribacter hongko... [more]
NDK_COLP38.564e-2744.12Nucleoside diphosphate kinase OS=Colwellia psychre... [more]
NDK_BURVG8.564e-2748.85Nucleoside diphosphate kinase OS=Burkholderia viet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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