CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_LEGPC (Nucleoside diphosphate kinase OS=Legionella pneumophila (strain Corby) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.492e-26
Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = -3
Query:  219 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVN 629
            E T   IKPD V + +I EI +RFE+ G  +VA K+   S+E A+  Y   + RPFF  L +F+ SGPV+  V +GE  +   R+++GAT+P+++ PGTIR D A  +  N +HGSD  E A  EI  +F+P +L N
Sbjct:    4 ELTLSIIKPDAVAKSVIGEIYTRFEKAGLDIVAAKMTQLSREQAENFYDIHRARPFFKDLVDFMISGPVMIQVLKGENAVAKNREIMGATNPKEAAPGTIRADFADSIDANAVHGSDSLENAAREIAFFFEPHELCN 140          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_LEGPA (Nucleoside diphosphate kinase OS=Legionella pneumophila (strain Paris) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.492e-26
Identity = 58/137 (42.34%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  219 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVN 629
            E T   IKPD V + +I EI +RFE+ G  +VA K++  S+E A+  Y   + RPFF  L +F+ SGPV+  V +G+  +   R+++GAT+P+++ PGTIR D A  +  N +HGSD  E A  EI  +F+P +L N
Sbjct:    4 ELTLSIIKPDAVAKSVIGEIYTRFEKAGLDIVAAKMIQLSREQAESFYDIHRARPFFKDLVDFMISGPVMIQVLKGDNAVAKNREIMGATNPKEAAPGTIRADFADSIDANAVHGSDSLENAAREIAFFFEPHELCN 140          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_RHIEC (Nucleoside diphosphate kinase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.254e-26
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  222 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 632
            +ERTF  IKPD  +R L   I    E  G ++VA K V  S+  A+  Y   K+RPFF  L E ++SGP +  V EGEG I   R+++GAT+P  +  GTIR   A+ +G N +HGSD PETA  EIK WF   ++V
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKMLEDAGLRVVASKRVWMSRREAEGFYAVHKDRPFFGELVEGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAQEIKYWFSDTEIV 139          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_CLOPE (Nucleoside diphosphate kinase OS=Clostridium perfringens GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.254e-26
Identity = 56/131 (42.75%), Postives = 89/131 (67.94%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 632
            +E++ + IKPD V+R LI +I+  +E  G K+ A+++   +KEFA+KHY + +++ FFN L ++++  P++A++ EGE  I   R L GAT+P+K+E GTIR   A+    N +H SD  E+A+ EIKLWF
Sbjct:    3 LEKSLVLIKPDAVERNLIGKILEVYEGAGLKIKAMEMKQINKEFAEKHYEEHRDKQFFNSLIKYITRSPLVALILEGEDAINKIRSLNGATNPEKAEFGTIRRRFALSGTENSVHASDSIESAEKEIKLWF 133          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_CLOP1 (Nucleoside diphosphate kinase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ndk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.254e-26
Identity = 56/131 (42.75%), Postives = 89/131 (67.94%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 632
            +E++ + IKPD V+R LI +I+  +E  G K+ A+++   +KEFA+KHY + +++ FFN L ++++  P++A++ EGE  I   R L GAT+P+K+E GTIR   A+    N +H SD  E+A+ EIKLWF
Sbjct:    3 LEKSLVLIKPDAVERNLIGKILEVYEGAGLKIKAMEMKQINKEFAEKHYEEHRDKQFFNSLIKYITRSPLVALILEGEDAINKIRSLNGATNPEKAEFGTIRRRFALSGTENSVHASDSIESAEKEIKLWF 133          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_STRMK (Nucleoside diphosphate kinase OS=Stenotrophomonas maltophilia (strain K279a) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = -3
Query:  219 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVN 632
            +ERT   IKPD V + +I EI +RFE+ G K+VA K    S+  A+  Y   +ERPFFN L EF+ SGPV+    EGE  +   R L+GAT+P+++ PGTIR D A  +  N  HGSD  E A  EI  +F   ++V+
Sbjct:    3 LERTLSIIKPDAVAKNVIGEIYARFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVLAHRDLLGATNPKEAAPGTIRADFAESIDANAAHGSDSVENAAIEIAYFFAATEVVS 140          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_STRM5 (Nucleoside diphosphate kinase OS=Stenotrophomonas maltophilia (strain R551-3) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 62/138 (44.93%), Postives = 84/138 (60.87%), Query Frame = -3
Query:  219 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVN 632
            +ERT   IKPD V + +I EI +RFE+ G K+VA K    S+  A+  Y   +ERPFFN L EF+ SGPV+    EGE  +   R L+GAT+P+++ PGTIR D A  +  N  HGSD  E A  EI  +F   ++V+
Sbjct:    3 LERTLSIIKPDAVAKNVIGEIYARFEKAGLKVVAAKYKQLSRREAEGFYAVHRERPFFNALVEFMISGPVMIQALEGENAVLAHRDLLGATNPKEAAPGTIRADFAESIDANAAHGSDSVENAAIEIAYFFAATEVVS 140          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PSEHT (Nucleoside diphosphate kinase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  213 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYT 632
            +ERTF  +KPD V +  I  I +RFE  G K+VA K+V  S+E A+  Y +  ERPFF  L  F++SGPV+  V EGE  +   R+++GAT+P  +  GT+R D A  +  N +HGSD  E+A  EI  +F  E+L + T
Sbjct:    3 LERTFSIVKPDAVAKNHIGAIYNRFETAGLKIVAAKMVHLSQEKAEGFYAEHSERPFFGALVSFMTSGPVMVTVLEGENAVLKNREIMGATNPADALAGTLRADYADSIDENAVHGSDAVESAAREIAYFFADEELCSRT 142          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_MARMM (Nucleoside diphosphate kinase OS=Maricaulis maris (strain MCS10) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  222 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 632
            ++RTF  IKPD   R L   I ++ E  G +++A K +  S+E A+  Y   KERPFFN L  F+ SGPV+  V EGE  I   R ++GAT+P++++ GTIR D A  +  N +HGSD PETA +EI  +F  +++V
Sbjct:    3 IQRTFSIIKPDATARNLTGAINAKIEAAGLRIIAQKRIRLSREQAEGFYGVHKERPFFNDLVTFMISGPVVVQVLEGEDAIAKYRTVMGATNPEQADAGTIRKDFAESIEANSVHGSDAPETAAEEIPFFFSDDEIV 139          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_JANMA (Nucleoside diphosphate kinase OS=Janthinobacterium sp. (strain Marseille) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 63/131 (48.09%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 632
            +ERT   IKPD V + +I +I SRFE  G K+VA ++   S+  A+  Y     RPFF  L +F+ SGPVI  V EGE  I   R L+GATDP+K++ GTIR D A  +  N +HGSD  ETAK EI  +F
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIVAARMTQLSRAEAEGFYAVHSARPFFKDLVDFMISGPVIIQVLEGENAIIKHRDLMGATDPKKADKGTIRADFADSIDANAVHGSDAEETAKVEIAYYF 133          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_LEGPC2.492e-2643.07Nucleoside diphosphate kinase OS=Legionella pneumo... [more]
NDK_LEGPA2.492e-2642.34Nucleoside diphosphate kinase OS=Legionella pneumo... [more]
NDK_RHIEC3.254e-2645.26Nucleoside diphosphate kinase OS=Rhizobium etli (s... [more]
NDK_CLOPE3.254e-2642.75Nucleoside diphosphate kinase OS=Clostridium perfr... [more]
NDK_CLOP13.254e-2642.75Nucleoside diphosphate kinase OS=Clostridium perfr... [more]
NDK_STRMK4.250e-2644.93Nucleoside diphosphate kinase OS=Stenotrophomonas ... [more]
NDK_STRM54.250e-2644.93Nucleoside diphosphate kinase OS=Stenotrophomonas ... [more]
NDK_PSEHT4.250e-2643.57Nucleoside diphosphate kinase OS=Pseudoalteromonas... [more]
NDK_MARMM4.250e-2643.80Nucleoside diphosphate kinase OS=Maricaulis maris ... [more]
NDK_JANMA4.250e-2648.09Nucleoside diphosphate kinase OS=Janthinobacterium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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