CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_HERAR (Nucleoside diphosphate kinase OS=Herminiimonas arsenicoxydans GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  240 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWF 632
            +ERT   IKPD V + +I +I SRFE  G K++A ++   S+  A+  Y     RPFF  L +F+ SGPV+  V EGE  I   R L+GATDP+K+E GTIR D A  +  N +HGSD  ETAK EI  +F
Sbjct:    3 IERTLSIIKPDAVAKNVIGQIYSRFEGAGLKIIAARMAQLSRAEAEGFYAVHSARPFFKDLVDFMISGPVMIQVLEGENAIAKHRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAEETAKVEIAYYF 133          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_HELP2 (Nucleoside diphosphate kinase OS=Helicobacter pylori (strain P12) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 60/135 (44.44%), Postives = 85/135 (62.96%), Query Frame = -3
Query:  225 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 629
            +RT   IKPD +++ ++ +II RFE  G ++VA+K +  S + A+  Y   +ERPFF  L EF+ SGPV+ MV EGE  +   R L+GATDP+ ++ GTIR D A  +  N +HGSD  E A +EI  +F   DL
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGEDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENAHNEIAFFFATRDL 137          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_HELHP (Nucleoside diphosphate kinase OS=Helicobacter hepaticus GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            ME+T   IKPD V++G+I +II RFE    ++ A+K +  ++  A+  Y   KERPFF  L +F+ SGPV+ MV EG   +   R L+GAT+P+++E GTIR D A  +  N +HGSD  E AK+EI  +F   ++
Sbjct:    1 MEQTLSIIKPDAVKKGVIGKIIDRFESNNLRICAMKKLQLTRCDAEAFYAIHKERPFFKDLVDFMISGPVVVMVLEGNNAVMKNRDLMGATNPKEAEAGTIRADFAQSIDANAVHGSDSLENAKNEIAFFFSTREI 136          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_EDWI9 (Nucleoside diphosphate kinase OS=Edwardsiella ictaluri (strain 93-146) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 56/136 (41.18%), Postives = 88/136 (64.71%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  +KP+ V +  I  I +RFE  G K+VA K+V  ++E A+  Y + +ERPFF+GL  F++SGP++  V EG   +   R+++GAT+P+ +  GT+R D A  +  N +HGSD P +A+ EI  +F  +D+
Sbjct:    3 LERTFSIVKPNAVAKNAIGAIYARFESAGLKIVAAKMVHLTREQAEGFYAEHRERPFFDGLVTFMTSGPIMVQVLEGNDAVRRNREIMGATNPESALAGTLRADYADSLTENAVHGSDSPASAEREIAYFFSADDI 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_CHLAB (Nucleoside diphosphate kinase OS=Chlamydophila abortus GN=ndk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.250e-26
Identity = 60/138 (43.48%), Postives = 86/138 (62.32%), Query Frame = -3
Query:  219 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVN 632
            ME+T   IKPD V +  I EII+ FE+ GF++ A+K++  S + A+  Y   K RPFF  L +F+ SGPV+ MV EG   +   R+++GAT+PQ++ PGTIR      +G N +HGSD  E A  EI  +F   ++VN
Sbjct:    1 MEQTLSIIKPDSVGKAHIGEIIAIFEKSGFRIAAMKMLHLSVKEAEGFYAVHKSRPFFQELVDFMISGPVVVMVLEGNNAVARNREIMGATNPQEAAPGTIRAQFGESIGINAVHGSDSLENAAIEINYFFSKVEIVN 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_WOLTR (Nucleoside diphosphate kinase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = -3
Query:  222 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 632
            +ERT   +KPD V+  +I  I S  E+ G +++A K+++ +K+ A+  Y   K+RPFF GL EF++SGPVI  V  GE  I+  R+++GATDP++++ GTIRGD A  V  N +HGSD  E A  EI  +F   +LV
Sbjct:    3 IERTLSILKPDTVKNNIIGNINSYIEKSGLRIIAQKMMLLTKKQAELFYAIHKDRPFFGGLVEFMTSGPVIVQVLVGENAISKYRQIMGATDPKQADKGTIRGDFADDVNENRVHGSDSLENAHKEIAFFFAECELV 139          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SULDN (Nucleoside diphosphate kinase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            MERT   IKPD V +G++ +I+ RFE  G K+ A + +  S+  A+  Y    ERPFF  L +F+ SGPV+  V EGEG +   R L+GAT+P+++E GTIR D A  +  N +HGSD  E A  EI  +F   ++
Sbjct:    1 MERTLSIIKPDAVAKGVVGKILDRFESNGLKIAATRKMQLSRADAEAFYAVHSERPFFGDLVDFMISGPVVVSVLEGEGALIKNRNLMGATNPKEAEAGTIRADFAENIDANAVHGSDSLENAAVEIAFFFSEREI 136          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SPHWW (Nucleoside diphosphate kinase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  222 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 629
            ERTF  IKPD  +R L   I ++ E  G ++VA K +  +KE A+  Y   +ERPFF  L  F+ SGPV+  V EGE  +   R+++GAT+P  ++ GTIR   A  +  N +HGSD  E AK EI  +FKPE++V
Sbjct:    4 ERTFSIIKPDATRRNLTGAITAKLEEAGLRVVASKRIHMTKEQAEGFYGVHRERPFFGDLVSFMISGPVVVQVLEGENAVARNREVMGATNPANADEGTIRKTFAESIEANSVHGSDSAENAKIEIDFFFKPEEIV 139          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHEWM (Nucleoside diphosphate kinase OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K++A K+V  SKE A+  Y +  ERPFF  L  F++SGP++    EGE  +   R ++GAT+P ++ PGTIR D A  +  N  HGSD   +A+ E+  +F  E+L
Sbjct:    3 IERTFSIIKPDAVAKNNIGAIYNRFETAGLKIIASKMVHLSKEQAEGFYAEHSERPFFGALVAFMTSGPIMVQTLEGENAVLAHRDILGATNPAEAAPGTIRADFAESIDENAAHGSDSVASAEREVAYFFSAEEL 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_RHILO (Nucleoside diphosphate kinase OS=Rhizobium loti GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 61/137 (44.53%), Postives = 81/137 (59.12%), Query Frame = -3
Query:  222 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 632
            +ERTF  IKPD  +R L   I    E  G +++A + V  S+  A+  Y   K+RPFF  L EF+SS P I  V EGE  I   R+++GAT+P  +  GTIR   A+ +G N +HGSD PETA  EIK WF   ++V
Sbjct:    3 LERTFSMIKPDATRRNLTGAITKMLEDAGLRVIASRRVWMSRREAEGFYAVHKDRPFFGELVEFMSSAPTIVQVLEGENAIARNREVMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAQEIKYWFSDTEIV 139          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_HERAR4.250e-2647.33Nucleoside diphosphate kinase OS=Herminiimonas ars... [more]
NDK_HELP24.250e-2644.44Nucleoside diphosphate kinase OS=Helicobacter pylo... [more]
NDK_HELHP4.250e-2643.38Nucleoside diphosphate kinase OS=Helicobacter hepa... [more]
NDK_EDWI94.250e-2641.18Nucleoside diphosphate kinase OS=Edwardsiella icta... [more]
NDK_CHLAB4.250e-2643.48Nucleoside diphosphate kinase OS=Chlamydophila abo... [more]
NDK_WOLTR5.551e-2644.53Nucleoside diphosphate kinase OS=Wolbachia sp. sub... [more]
NDK_SULDN5.551e-2643.38Nucleoside diphosphate kinase OS=Sulfurimonas deni... [more]
NDK_SPHWW5.551e-2644.12Nucleoside diphosphate kinase OS=Sphingomonas witt... [more]
NDK_SHEWM5.551e-2643.38Nucleoside diphosphate kinase OS=Shewanella woodyi... [more]
NDK_RHILO5.551e-2644.53Nucleoside diphosphate kinase OS=Rhizobium loti GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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