CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_PHOLL (Nucleoside diphosphate kinase OS=Photorhabdus luminescens subsp. laumondii GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 58/136 (42.65%), Postives = 87/136 (63.97%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKP+ V++  I  I +RFE  GFK++A K++  ++E A+  Y + K RPFF+GL EF++SGP++  V EGE  +   R L+GAT+P  +  GT+R D A     N +HGSD  E+A  EI  +F  +++
Sbjct:    3 VERTFSIIKPNAVKKNAIGAIYARFESAGFKIIAAKMLHLTREQAEGFYAEHKGRPFFDGLVEFMTSGPIVVQVLEGENAVQRHRDLMGATNPDNALAGTLRADYADSFTENAVHGSDAVESANREIAYFFTEDEI 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_NOVAD (Nucleoside diphosphate kinase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 61/135 (45.19%), Postives = 82/135 (60.74%), Query Frame = -3
Query:  222 RTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 626
            RTF  IKPD  +R L   +    E  G ++VA K +  S+E A+  Y   KERPFF  L EF+ SGPV+  V EGE  +   R ++GAT+P+ + PGTIR +LA  +  N +HGSD  E A  EI  +FKPE++V
Sbjct:    5 RTFSIIKPDATRRNLTGAVTKMLEEAGLRVVASKRIHMSREQAEGFYAVHKERPFFGELVEFMISGPVVVQVLEGEDAVKRNRDIMGATNPKDAAPGTIRKELAESIEANSVHGSDSEENAAIEIAYFFKPEEIV 139          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_GEOMG (Nucleoside diphosphate kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 55/137 (40.15%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  222 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 632
            MERTF  IKPD V+R ++ +++ + E  GF++V +K +  SK+ A+  Y+   ERPFF  LC F+S  PV+ +  E E  I   R+++GAT+P  ++ GTIR +  + +  N +HGSD PE+A  EI  +F   +L+
Sbjct:    1 MERTFAIIKPDAVERNIVGKVLEKIEAAGFRIVGMKKIQLSKKEAEGFYYVHSERPFFGDLCSFMSRSPVVVLALERENAIAKWREVMGATNPANADAGTIRKEFGLSIEENTVHGSDSPESAAFEIPYFFSQLELL 137          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BARHE (Nucleoside diphosphate kinase OS=Bartonella henselae GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 62/137 (45.26%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  222 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 632
            +ERTF  IKPD  +R L   I    E  G +++A K V  S+  A+K Y   KER FF+ L E +SSGP I  V EGE  I   R+++GAT+P+ ++ GTIR   A+ +G N +HGSD  ETAK EI  WF   ++V
Sbjct:    3 VERTFSMIKPDATRRNLTGAITKMLEDAGLRVIASKRVWMSQREAEKFYAVHKERAFFSELVELMSSGPTIVQVLEGENAIAKNREVMGATNPEDAQEGTIRKVHALSIGENSVHGSDSAETAKTEIAFWFSEVEIV 139          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_AGRRK (Nucleoside diphosphate kinase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = -3
Query:  222 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 632
            +ERTF  IKPD  +R L   I   FE  G +++A K V  SK  A+  Y   KERPFF  L + ++SGP +  V EGEG I   R+++GAT+P  +  GTIR   A+ +G N +HGSD PETA  EI  WF   ++V
Sbjct:    3 IERTFSMIKPDATKRNLTGAITKIFEDNGLRVIASKRVWMSKREAEGFYAVHKERPFFGELVDGMTSGPTVVQVLEGEGAILKNREIMGATNPANAAEGTIRKIHALSIGENSVHGSDAPETAAVEIAYWFSETEIV 139          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_ACIF5 (Nucleoside diphosphate kinase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERT   IKPD VQ+  I  I+ RFE+ G ++ A K++  S++ A   Y   + RPF+  LC+F+SSGPV+  V EGEG I   R L+GAT+P+ +  GTIR D A  +  N +HGSD  ETA  EI  +F   ++
Sbjct:    3 VERTLSIIKPDAVQKNAIGAILGRFEKAGLRIAAAKMLHLSRDDAGGFYAVHQARPFYGELCDFMSSGPVLVTVLEGEGAIAKNRDLMGATNPKDAAAGTIRADFADSIDANAVHGSDSAETAAWEISYFFGQREI 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_ACIF2 (Nucleoside diphosphate kinase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=ndk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.551e-26
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERT   IKPD VQ+  I  I+ RFE+ G ++ A K++  S++ A   Y   + RPF+  LC+F+SSGPV+  V EGEG I   R L+GAT+P+ +  GTIR D A  +  N +HGSD  ETA  EI  +F   ++
Sbjct:    3 VERTLSIIKPDAVQKNAIGAILGRFEKAGLRIAAAKMLHLSRDDAGGFYAVHQARPFYGELCDFMSSGPVLVTVLEGEGAIAKNRDLMGATNPKDAAAGTIRADFADSIDANAVHGSDSAETAAWEISYFFGQREI 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_LEPIN (Nucleoside diphosphate kinase OS=Leptospira interrogans GN=ndk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26
Identity = 58/136 (42.65%), Postives = 86/136 (63.24%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            M RTFI IKPDGV+   +  I+SR E++GFK++ +K +  S E A++ Y     RPF+N LC ++SSGP++A   E +  + + R++IGATDP+++  GTIR   A     N +HGSD  + A  EI  +FK  +L
Sbjct:    1 MSRTFIMIKPDGVKNKHVGNILSRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDDNAALEISFFFKGNEL 136          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_LEPIC (Nucleoside diphosphate kinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ndk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26
Identity = 58/136 (42.65%), Postives = 86/136 (63.24%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            M RTFI IKPDGV+   +  I+SR E++GFK++ +K +  S E A++ Y     RPF+N LC ++SSGP++A   E +  + + R++IGATDP+++  GTIR   A     N +HGSD  + A  EI  +FK  +L
Sbjct:    1 MSRTFIMIKPDGVKNKHVGNILSRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNAVLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDDNAALEISFFFKGNEL 136          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_HELPS (Nucleoside diphosphate kinase OS=Helicobacter pylori (strain Shi470) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.250e-26
Identity = 58/135 (42.96%), Postives = 86/135 (63.70%), Query Frame = -3
Query:  225 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 629
            +RT   IKPD +++ ++ +II RFE  G +++A+K +  S + A+  Y   +ERPFF  L EF+ SGPV+ MV EG+  +   R L+GATDP+ ++ GTIR D A  +  N +HGSD  E A++EI  +F   DL
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVIAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENARNEIAFFFAARDL 137          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_PHOLL5.551e-2642.65Nucleoside diphosphate kinase OS=Photorhabdus lumi... [more]
NDK_NOVAD5.551e-2645.19Nucleoside diphosphate kinase OS=Novosphingobium a... [more]
NDK_GEOMG5.551e-2640.15Nucleoside diphosphate kinase OS=Geobacter metalli... [more]
NDK_BARHE5.551e-2645.26Nucleoside diphosphate kinase OS=Bartonella hensel... [more]
NDK_AGRRK5.551e-2645.26Nucleoside diphosphate kinase OS=Agrobacterium rad... [more]
NDK_ACIF55.551e-2644.12Nucleoside diphosphate kinase OS=Acidithiobacillus... [more]
NDK_ACIF25.551e-2644.12Nucleoside diphosphate kinase OS=Acidithiobacillus... [more]
NDK_LEPIN7.250e-2642.65Nucleoside diphosphate kinase OS=Leptospira interr... [more]
NDK_LEPIC7.250e-2642.65Nucleoside diphosphate kinase OS=Leptospira interr... [more]
NDK_HELPS7.250e-2642.96Nucleoside diphosphate kinase OS=Helicobacter pylo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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