CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_YERPN (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 58/136 (42.65%), Postives = 87/136 (63.97%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKP+ V    I  I +RFER GFK++A K++  +KE A+  Y + K RPFF+GL EF++SGP++  V EGE  +   R ++GAT+P  +  GT+R D +     N +HGSD  E+A+ EI  +F  +++
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFFAADEI 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_YERPG (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 58/136 (42.65%), Postives = 87/136 (63.97%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKP+ V    I  I +RFER GFK++A K++  +KE A+  Y + K RPFF+GL EF++SGP++  V EGE  +   R ++GAT+P  +  GT+R D +     N +HGSD  E+A+ EI  +F  +++
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFFAADEI 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_YERPE (Nucleoside diphosphate kinase OS=Yersinia pestis GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 58/136 (42.65%), Postives = 87/136 (63.97%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKP+ V    I  I +RFER GFK++A K++  +KE A+  Y + K RPFF+GL EF++SGP++  V EGE  +   R ++GAT+P  +  GT+R D +     N +HGSD  E+A+ EI  +F  +++
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFFAADEI 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_YERPA (Nucleoside diphosphate kinase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 58/136 (42.65%), Postives = 87/136 (63.97%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKP+ V    I  I +RFER GFK++A K++  +KE A+  Y + K RPFF+GL EF++SGP++  V EGE  +   R ++GAT+P  +  GT+R D +     N +HGSD  E+A+ EI  +F  +++
Sbjct:    3 LERTFSIIKPNAVANNDIGAIYARFERAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPIMVQVLEGENAVQRHRDIMGATNPDNALAGTLRADFSDSFTANAVHGSDAVESAQREIAYFFAADEI 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_VIBPA (Nucleoside diphosphate kinase OS=Vibrio parahaemolyticus GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 56/136 (41.18%), Postives = 89/136 (65.44%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  +KPD V+R LI EI +R E+ G +++A K+V  ++E A   Y + + + FF  L EF++SGP++  V EGE  I   R+L+G T+P+++  GT+R D A+ +  N +HGSD PE+A  EI+ +F   ++
Sbjct:    3 LERTFSIVKPDAVERNLIGEIYNRIEKAGLRIIAAKMVHLTEEQASGFYAEHEGKEFFQPLKEFMTSGPIMVQVLEGENAIARYRELMGKTNPEEAAAGTLRADYALSMRHNSVHGSDSPESAAREIEFFFPESEI 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHESR (Nucleoside diphosphate kinase OS=Shewanella sp. (strain MR-7) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A  +  N  HGSD  E+A  EI  +F  E+L
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAQSIDENAAHGSDSLESAAREIAYFFSAEEL 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHESM (Nucleoside diphosphate kinase OS=Shewanella sp. (strain MR-4) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A  +  N  HGSD  E+A  EI  +F  E+L
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAQSIDENAAHGSDSLESAAREIAYFFSAEEL 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHESA (Nucleoside diphosphate kinase OS=Shewanella sp. (strain ANA-3) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A  +  N  HGSD  E+A  EI  +F  E+L
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVAAKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAESIDENAAHGSDALESAAREIAYFFSAEEL 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHEFN (Nucleoside diphosphate kinase OS=Shewanella frigidimarina (strain NCIMB 400) GN=ndk PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K++A K+V  SKE A+  Y +   RPFF  L  F++SGPV+  V EGE  +   R+++GAT+P ++  GT+R D A  +  N +HGSD  E+A  EI  +F  +++
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFESAGLKIIASKMVQLSKEQAEGFYAEHSARPFFGALVSFMTSGPVMVQVLEGENAVLANREIMGATNPAEAARGTLRADYAASIDENAVHGSDAVESAAREIAYFFSADEV 138
[Close]
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHEB9 (Nucleoside diphosphate kinase OS=Shewanella baltica (strain OS195) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3 
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A  +  N  HGSD  E+A  EI  +F  E+L
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVASKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAESIDENAAHGSDAVESAAREIAYFFSAEEL 138
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_YERPN1.237e-2542.65Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPG1.237e-2542.65Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_YERPE1.237e-2542.65Nucleoside diphosphate kinase OS=Yersinia pestis G... [more]
NDK_YERPA1.237e-2542.65Nucleoside diphosphate kinase OS=Yersinia pestis b... [more]
NDK_VIBPA1.237e-2541.18Nucleoside diphosphate kinase OS=Vibrio parahaemol... [more]
NDK_SHESR1.237e-2544.12Nucleoside diphosphate kinase OS=Shewanella sp. (s... [more]
NDK_SHESM1.237e-2544.12Nucleoside diphosphate kinase OS=Shewanella sp. (s... [more]
NDK_SHESA1.237e-2544.12Nucleoside diphosphate kinase OS=Shewanella sp. (s... [more]
NDK_SHEFN1.237e-2542.65Nucleoside diphosphate kinase OS=Shewanella frigid... [more]
NDK_SHEB91.237e-2544.12Nucleoside diphosphate kinase OS=Shewanella baltic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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