CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHEB8 (Nucleoside diphosphate kinase OS=Shewanella baltica (strain OS185) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A  +  N  HGSD  E+A  EI  +F  E+L
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVASKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAESIDENAAHGSDAVESAAREIAYFFSAEEL 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHEB5 (Nucleoside diphosphate kinase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A  +  N  HGSD  E+A  EI  +F  E+L
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVASKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAESIDENAAHGSDAVESAAREIAYFFSAEEL 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHEB2 (Nucleoside diphosphate kinase OS=Shewanella baltica (strain OS223) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K+VA K++  +KE A+  Y +  ER FF  L  F++SGP++  V EGE  +   R+++GAT+P ++ PGTIR D A  +  N  HGSD  E+A  EI  +F  E+L
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFETAGLKIVASKMLHLTKEQAEGFYAEHSERGFFGALVAFMTSGPIMVQVLEGENAVLAHREILGATNPAQAAPGTIRADFAESIDENAAHGSDAVESAAREIAYFFSAEEL 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_HELPY (Nucleoside diphosphate kinase OS=Helicobacter pylori GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 59/135 (43.70%), Postives = 85/135 (62.96%), Query Frame = -3
Query:  225 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 629
            +RT   IKPD +++ ++ +II RFE  G ++VA+K +  S + A+  Y   +ERPFF  L EF+ SGPV+ MV EG+  +   R L+GATDP+ ++ GTIR D A  +  N +HGSD  E A +EI  +F   DL
Sbjct:    3 QRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDSLENAHNEIAFFFAARDL 137          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_ANAMM (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain St. Maries) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = -3
Query:  201 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAE 629
            E+T   +KPD V+RG+I  ++S  E  G ++VA ++   S E A+  Y   K RPFF  L  F++SGPV+  V  GE  +   R ++GAT+P ++ PGTIRGDLA  +  N +HGSD  E A+ EIK +FK  ++++   N +
Sbjct:    4 EKTLSILKPDVVERGIIGRVLSYIEAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEIMSSMPNGK 146          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_ANAMF (Nucleoside diphosphate kinase OS=Anaplasma marginale (strain Florida) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 59/143 (41.26%), Postives = 88/143 (61.54%), Query Frame = -3
Query:  201 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAE 629
            E+T   +KPD V+RG+I  ++S  E  G ++VA ++   S E A+  Y   K RPFF  L  F++SGPV+  V  GE  +   R ++GAT+P ++ PGTIRGDLA  +  N +HGSD  E A+ EIK +FK  ++++   N +
Sbjct:    4 EKTLSILKPDVVERGIIGRVLSYIEAAGLRIVAQRMCALSHEQAEAFYAVHKARPFFPSLVGFMTSGPVVVQVLVGESAVKTYRDVMGATNPSEAAPGTIRGDLAESIDANCVHGSDSLENAEWEIKFFFKEHEIMSSMPNGK 146          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_ACTSZ (Nucleoside diphosphate kinase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=ndk PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.237e-25
Identity = 59/136 (43.38%), Postives = 89/136 (65.44%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERT   IKPD V+R L+ +I+SRFE  GF++VA+K++  ++  A+  Y + + +PFF+GL E+++S PV+  V E +  +   R LIGATDPQ++  GTIR D A    RN +HGSD  E+A  EI  +F   ++
Sbjct:    3 LERTLSIIKPDAVERNLVGKILSRFEENGFQIVAMKMLRLNQAQAEGFYAEHQGKPFFDGLVEYMTSAPVVVSVLEKDNAVKDYRTLIGATDPQQAAEGTIRKDFAESRRRNSVHGSDSEESAVREIAYFFVESEI 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_YERE8 (Nucleoside diphosphate kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 59/136 (43.38%), Postives = 86/136 (63.24%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKP+ V +  I  I +RFE  GFK++A K++  +KE A+  Y + K RPFF+GL EF++SGPV+  V EGE  +   R ++GAT+P  +  GT+R D A     N +HGSD  E+A+ EI  +F   ++
Sbjct:    3 VERTFSIIKPNAVAKNNIGAIYARFESAGFKIIAAKMLHLTKEQAEGFYAEHKGRPFFDGLVEFMTSGPVMIQVLEGENAVQRHRDIMGATNPDNALAGTLRADFADSFTENAVHGSDAVESAQREIAYFFSENEI 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SHEAM (Nucleoside diphosphate kinase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=ndk PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 57/136 (41.91%), Postives = 85/136 (62.50%), Query Frame = -3
Query:  225 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDL 632
            +ERTF  IKPD V +  I  I +RFE  G K++A K+V  +KE A+  Y +  ERPFF  L  F++SGP++  V EGE  +   R+++GAT+P ++  GT+R D A  +  N +HGSD   +A+ EI  +F  ++L
Sbjct:    3 IERTFSIIKPDAVAKNHIGAIYNRFESAGLKIIAAKMVHLTKEQAEGFYAEHSERPFFGALVSFMTSGPIMVQVLEGENAVLANREIMGATNPAQAARGTLRADYAASIDENAVHGSDALASAEREIAYFFAADEL 138          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_RHOSU (Nucleoside diphosphate kinase OS=Rhodovulum sulfidophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.615e-25
Identity = 59/137 (43.07%), Postives = 87/137 (63.50%), Query Frame = -3
Query:  222 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 632
            ++RTF  IKPD  +R L   I ++ E  G ++VA K +  SK  A   Y   KERPF++ LCEF++S P++  V EGE  I   R+++GAT+P ++  GTIR + A+ +G N +HGSD  +TAK+EI  +F   +LV
Sbjct:    3 IQRTFSIIKPDATKRNLTGAINAKLEAAGLRIVAQKRIHLSKAQAAVFYAVHKERPFYDELCEFMASEPIVVQVLEGEDAIAKNREVMGATNPAEAAEGTIRKEFALSIGENSVHGSDAEDTAKEEIAYFFSGLELV 139          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SHEB81.237e-2544.12Nucleoside diphosphate kinase OS=Shewanella baltic... [more]
NDK_SHEB51.237e-2544.12Nucleoside diphosphate kinase OS=Shewanella baltic... [more]
NDK_SHEB21.237e-2544.12Nucleoside diphosphate kinase OS=Shewanella baltic... [more]
NDK_HELPY1.237e-2543.70Nucleoside diphosphate kinase OS=Helicobacter pylo... [more]
NDK_ANAMM1.237e-2541.26Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_ANAMF1.237e-2541.26Nucleoside diphosphate kinase OS=Anaplasma margina... [more]
NDK_ACTSZ1.237e-2543.38Nucleoside diphosphate kinase OS=Actinobacillus su... [more]
NDK_YERE81.615e-2543.38Nucleoside diphosphate kinase OS=Yersinia enteroco... [more]
NDK_SHEAM1.615e-2541.91Nucleoside diphosphate kinase OS=Shewanella amazon... [more]
NDK_RHOSU1.615e-2543.07Nucleoside diphosphate kinase OS=Rhodovulum sulfid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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