CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.961e-47
Identity = 86/148 (58.11%), Postives = 114/148 (77.03%), Query Frame = -3
Query:  186 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 629
            ERTFIA+KPDGVQR ++ E+I RFE+KGFKLVA+K +   K+  +KHY +L ++PF+  L +++SSGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGRNIIHGSD  E+AK EI LWFK E+LV Y + A+ W+YE
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_GEOKA (Nucleoside diphosphate kinase OS=Geobacillus kaustophilus GN=ndk PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.961e-47
Identity = 85/147 (57.82%), Postives = 115/147 (78.23%), Query Frame = -3
Query:  189 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 629
            ERTFI +KPDGVQR LI EI++RFE+KGF+LV  K++  S+E A++HY + KERPFF  L +F++SGPV AMVWEGE VI   R+++G T+PQ++ PGTIRGD  + VG+N+IHGSD P++AK EI L+FK E+LV+Y+     W+Y
Sbjct:    3 ERTFIMVKPDGVQRNLIGEIVARFEKKGFQLVGAKLMQVSRELAEQHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIAAARQMMGKTNPQEAAPGTIRGDFGLTVGKNVIHGSDSPQSAKREISLFFKEEELVSYSKQINAWLY 149          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACSK (Nucleoside diphosphate kinase OS=Bacillus clausii (strain KSM-K16) GN=ndk PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.344e-47
Identity = 88/147 (59.86%), Postives = 114/147 (77.55%), Query Frame = -3
Query:  192 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWV 632
            MERT++ +KPDGVQR LI  I+SRFE+KG+ L A K+V  SKE A+ HY + +ERPFF  L  F++SGPV AMVWEGEGVI   R+LIGAT+P ++ PGTIRGDLAV VG N++HGSD PE+A+ EI ++FK E+L +Y  ++ KWV
Sbjct:    1 MERTYVMVKPDGVQRNLIGNIVSRFEQKGYTLAAAKLVTLSKETAETHYSEHRERPFFGELVSFITSGPVFAMVWEGEGVIKAARQLIGATNPSEAAPGTIRGDLAVNVGMNVVHGSDSPESAEREIAIFFKEEELNDYQKDSNKWV 147          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_NEUCR (Nucleoside diphosphate kinase OS=Neurospora crassa GN=ndk-1 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 7.451e-47
Identity = 83/151 (54.97%), Postives = 112/151 (74.17%), Query Frame = -3
Query:  186 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 638
            +  E+TFIA+KPDGVQRGL+  IISRFE +GFKLVA+K+  P +   +KHY DL  +PFF GL ++++SGP+ AMVWEG+  +  GR ++GAT+P  S PGTIRGD A+ +GRN+ HGSD  E AK EI LWFKPE+L  +  ++  W++E
Sbjct:    2 SNQEQTFIAVKPDGVQRGLVGNIISRFENRGFKLVAMKLTQPGQAHLEKHYEDLNTKPFFAGLIKYMNSGPICAMVWEGKDAVKTGRTILGATNPLASAPGTIRGDFALDMGRNVCHGSDSVENAKKEIALWFKPEELNQWNHHSAAWIFE 152          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.731e-47
Identity = 86/150 (57.33%), Postives = 111/150 (74.00%), Query Frame = -3
Query:  186 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 635
            E+E T+I IKPDGVQRGL+ EIISRFE+KGFKL  +K+    KE A++HY DL+ +PFF  L ++++SGPV+ M WEG GV+   RKLIGAT+P  +EPGTIRGDLAV  GRN++HGSD P+  K EI LWF   +L ++T   E W+ E
Sbjct:   83 EVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 9.731e-47
Identity = 95/200 (47.50%), Postives = 125/200 (62.50%), Query Frame = -3
Query:  186 AAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 785
            A V F   L      F     ++ASR  L  + +  +  + L        ++E T+I +KPDG+QRGL+ EIISRFE+KGFKL+ +K+    KE A++HY DL  + FF  L E+++SGPV+ M WEG GV+   RKLIG TDP ++EPGTIRGDLAV  GRNI+HGSD PE  K EI LWFK  +L  + S    W+ E
Sbjct:   33 ARVNFRTALAAFRPQFRLFSRNSASRRRLRASSSAESGIF-LPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SOLLC (Nucleoside diphosphate kinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.271e-46
Identity = 86/145 (59.31%), Postives = 111/145 (76.55%), Query Frame = -3
Query:  186 FIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 620
            FI IKPDGVQRGL+ EIISRFE+KGF L  +K++   + FA+KHY DL  +PFFNGL E++ SGPV+AMVWEG+GV+  GRK+IGAT+P +S  GTIRGD A+ +GRN+IHGSD  E+A+ EI LWF PE +  + S+    +YE
Sbjct:    1 FIMIKPDGVQRGLVGEIISRFEKKGFSLKGLKLITVDRAFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKIIGATNPLESAAGTIRGDFAIDIGRNVIHGSDAVESARKEIALWF-PEGIAEWQSSLHSCIYE 144          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.271e-46
Identity = 89/150 (59.33%), Postives = 112/150 (74.67%), Query Frame = -3
Query:  183 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 632
            ME++FI IKPDGVQRGLI +IISRFE+KGF L  +K +   + FAQ+HY DL ++PFF GL E++ SGPV+AMVWEG+ V+  GR++IGAT P ++ PGTIR D AV VGRN+IHGSD  +  K EI LWF PE L  + SN   W+YES
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWF-PEGLAEWRSNLHPWIYES 149          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.660e-46
Identity = 89/150 (59.33%), Postives = 112/150 (74.67%), Query Frame = -3
Query:  183 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 632
            ME++FI IKPDGVQRGLI +IISRFE+KGF L  +K +   + FAQ+HY DL ++PFF GL E++ SGPV+AMVWEG+ V+  GR++IGAT P ++ PGTIR D AV VGRN+IHGSD  +  K EI LWF PE L  + SN   W+YES
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWF-PEGLAEWRSNLHPWIYES 149          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.168e-46
Identity = 84/150 (56.00%), Postives = 111/150 (74.00%), Query Frame = -3
Query:  186 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 635
            ++E T+I IKPDGVQRGL+ EIISRFE+KGFKL+ +K+    KE A++HY DLK + F+  L ++++SGPV+ M WEG GV+   RKLIGATDP ++EPGTIRGDLAV  GRN++HGSD P+  K EI LWFK  ++  +T     W+ E
Sbjct:   84 QVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIGLWFKEGEICQWTPAQAPWLRE 233          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_GINCI1.961e-4758.11Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDK_GEOKA1.961e-4757.82Nucleoside diphosphate kinase OS=Geobacillus kaust... [more]
NDK_BACSK3.344e-4759.86Nucleoside diphosphate kinase OS=Bacillus clausii ... [more]
NDK_NEUCR7.451e-4754.97Nucleoside diphosphate kinase OS=Neurospora crassa... [more]
NDK2_TOBAC9.731e-4757.33Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_ARATH9.731e-4747.50Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK_SOLLC1.271e-4659.31Nucleoside diphosphate kinase (Fragment) OS=Solanu... [more]
NDK1_ORYSJ1.271e-4659.33Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI1.660e-4659.33Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK2_SPIOL2.168e-4656.00Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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