CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.698e-46
Identity = 96/210 (45.71%), Postives = 131/210 (62.38%), Query Frame = -3
Query:  186 YSEGRAVSAAAAVTFSGKLPYLVSSFGRAGSSTASRSWLSGAIAIPAAAYTLQEQEVHAAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 815
            YS+ R     +A +    L    S+      +  +RS     I +P    +L++       +++ +I +KPDGVQRGL+ EIISRFE+KGFKL  +K+   SKE A++HY  L ++ FF  L E+++SGPV++M WEG GV+   RKLIGATDP ++EPGTIRGD AV  GRNIIHGSD PE  + EI LWFK  +L  +T   E W+ E
Sbjct:   28 YSQLRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQ-------VDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGDFAVQTGRNIIHGSDSPENGEREIALWFKEGELCEWTPVQEPWLRE 230          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_YEAST (Nucleoside diphosphate kinase OS=Saccharomyces cerevisiae GN=YNK1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.829e-46
Identity = 82/152 (53.95%), Postives = 116/152 (76.32%), Query Frame = -3
Query:  186 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 641
            +++ ERTFIA+KPDGVQRGL+S+I+SRFE+KG+KLVAIK+V    +  ++HY +   +PFF  +  F+ SGP++A VWEG+ V+  GR ++GAT+P  S PGTIRGD  + +GRN+ HGSD  ++A+ EI LWFK E+LV++ SN  KW+YE
Sbjct:    2 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 153          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 86/149 (57.72%), Postives = 111/149 (74.50%), Query Frame = -3
Query:  186 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 632
            MERTFIAIKPDGVQRGL+ EI+ RFER+GFKLV +K++  S+  AQKHY + KERPFF GL  F++S PV+A+V EG+GV+   R ++G T+P  S  GTIRGD  + +GRNIIHGSD  E+A+ EI LWF P +L+ + +    WVYE
Sbjct:    1 MERTFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGRNIIHGSDSLESAEREIALWFAPAELLEWQATLGSWVYE 149          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_ASHGO (Nucleoside diphosphate kinase OS=Ashbya gossypii GN=NDK1 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 83/148 (56.08%), Postives = 114/148 (77.03%), Query Frame = -3
Query:  186 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 629
            ERTFIAIKPDGVQRGLIS+I+SRFE +G+KLV IK+V P++   ++HY +  E+PFF  +  +++SGP++A VWEG+ V+  GR ++GAT+P  S PGTIRGD A+ +GRN+ HGSD  E+A+ EI LWFK E+LV++  N   W+YE
Sbjct:    4 ERTFIAIKPDGVQRGLISKILSRFESRGYKLVGIKLVTPTENLLKQHYAEHVEKPFFPKMLAYMTSGPILATVWEGKDVVKQGRVILGATNPLNSAPGTIRGDFALDMGRNVCHGSDSVESAQREIDLWFKKEELVDWKLNQLSWIYE 151          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 82/148 (55.41%), Postives = 115/148 (77.70%), Query Frame = -3
Query:  186 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 629
            ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V  S+E  ++HY +L+ERPF+  L ++++SGPV+AMVW+G  V+   R LIGAT+P  + PGTIRGD  + VG+N+IHGSD  E+A+ EI LWF+ ++L+ +  +A  W+YE
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDKC_DICDI (Nucleoside diphosphate kinase, cytosolic OS=Dictyostelium discoideum GN=ndkC-1 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.974e-45
Identity = 84/136 (61.76%), Postives = 108/136 (79.41%), Query Frame = -3
Query:  222 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLV 629
            ERTF+A+KPDGV RGL+ EII+R+E+KGF LV +K +VP+K+ A+ HY + KERPFF GL  F++SGPV+AMV+EG+GV+   R +IG T+P  S PG+IRGD  V VGRNIIHGSD  E+A  EI LWFKPE+L+
Sbjct:    9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELL 144          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK3_MOUSE (Nucleoside diphosphate kinase 3 OS=Mus musculus GN=Nme3 PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 6.974e-45
Identity = 83/148 (56.08%), Postives = 114/148 (77.03%), Query Frame = -3
Query:  186 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 629
            ERTF+A+KPDGVQR L+ EI+ RFERKGFKLVA+K+V  S+E  ++HY +L+E+PF++ L +++SSGPV+AMVW+G  V+   R LIGATDP  + PGTIRGD  + VG+N+IHGSD  E+A  EI LWF+  +L+ +  +A  W+YE
Sbjct:   22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYVELREKPFYSRLVKYMSSGPVVAMVWQGLDVVHASRALIGATDPGDAMPGTIRGDFCMEVGKNVIHGSDSVESAHREIALWFREAELLCWEDSAGHWLYE 169          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_STACT (Nucleoside diphosphate kinase OS=Staphylococcus carnosus (strain TM300) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.190e-44
Identity = 85/150 (56.67%), Postives = 111/150 (74.00%), Query Frame = -3
Query:  183 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYES 632
            MERTF+ IKPDGVQR L+ EII+R E+KG KLV  K +  SKE A+ HY +  ++PF+ GL  F++S PV AMV EGE V+   R +IG T+P ++ PGTIRGDL + VGRN+IHGSD  E+AK EI LWF+P +L  YT+N E+W+YE+
Sbjct:    1 MERTFLMIKPDGVQRKLVGEIITRLEKKGLKLVGGKFMTVSKEKAETHYGEHADKPFYEGLVSFITSAPVFAMVVEGENVVEVTRNMIGKTNPTEAAPGTIRGDLGLTVGRNVIHGSDSVESAKREISLWFEPNELSVYTANDEEWLYEN 150          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDKM_DICDI (Nucleoside diphosphate kinase, mitochondrial OS=Dictyostelium discoideum GN=ndkM PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.554e-44
Identity = 88/140 (62.86%), Postives = 107/140 (76.43%), Query Frame = -3
Query:  210 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTS 629
            ER+FIAIK    QR LI EII+RFE+KGFKLV IKI+VP+ E A KHY DL ++PFFNGL +F SSG V+AMV+EG+ V+  GR LIGATDP +S PGTIR DL +  GRNIIHGSD  E+A  EI LWFK +++ N+ S
Sbjct:   73 ERSFIAIKVSSTQRRLIGEIIARFEKKGFKLVGIKILVPTPEHAAKHYEDLNKKPFFNGLVKFFSSGAVVAMVFEGKDVVRTGRVLIGATDPSQSAPGTIRFDLCIETGRNIIHGSDSNESAAHEIALWFKEDEIANWVS 212          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACHD (Nucleoside diphosphate kinase OS=Bacillus halodurans GN=ndk PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.650e-44
Identity = 84/147 (57.14%), Postives = 107/147 (72.79%), Query Frame = -3
Query:  192 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWV 632
            MERT++ IKPDGVQR LI EI+SRFE+KGF L+  K++  +KE A+ HY + KERPFF  L +F++SGPV AMVWEGE VI   RK++GAT+P  +EPGTIRGD  V V  N+IHGSD PE+AK EI ++F   +L  Y     +WV
Sbjct:    1 MERTYLMIKPDGVQRNLIGEIVSRFEKKGFTLIGAKLMTVTKEQAETHYAEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGATNPADAEPGTIRGDFGVQVAMNVIHGSDSPESAKREIDIFFDSSELNEYDKVVNRWV 147          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK2_PEA3.698e-4645.71Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_YEAST4.829e-4653.95Nucleoside diphosphate kinase OS=Saccharomyces cer... [more]
NDK_GLOVI1.835e-4557.72Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK_ASHGO1.835e-4556.08Nucleoside diphosphate kinase OS=Ashbya gossypii G... [more]
NDK3_HUMAN1.835e-4555.41Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDKC_DICDI6.974e-4561.76Nucleoside diphosphate kinase, cytosolic OS=Dictyo... [more]
NDK3_MOUSE6.974e-4556.08Nucleoside diphosphate kinase 3 OS=Mus musculus GN... [more]
NDK_STACT1.190e-4456.67Nucleoside diphosphate kinase OS=Staphylococcus ca... [more]
NDKM_DICDI1.554e-4462.86Nucleoside diphosphate kinase, mitochondrial OS=Di... [more]
NDK_BACHD2.650e-4457.14Nucleoside diphosphate kinase OS=Bacillus halodura... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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