CF833984

Overview
NameCF833984
Unique NameCF833984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length832
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12237 contig Csv1_Contig12237:159..990. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_DESRM (Nucleoside diphosphate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=ndk PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.904e-44
Identity = 81/149 (54.36%), Postives = 117/149 (78.52%), Query Frame = -3
Query:  186 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 632
            MERT++ +KPDGVQRGLI +IIS+FE+KG+K+V +K++  S+E A++HY +   +PFFNGL +F++SGPV+AMV EG+ V+T  R+++GAT+P K+ PGTIR    V VGRNIIHGSD  E+A+ EI ++FK E+L++Y    + W+YE
Sbjct:    1 MERTYLMVKPDGVQRGLIGQIISKFEQKGYKIVGLKMMQISREVAERHYGEHAGKPFFNGLVDFITSGPVVAMVIEGKDVVTTAREMMGATNPLKAAPGTIRATFGVDVGRNIIHGSDSLESAQREIGIFFKSEELIDYDRAIDTWIYE 149          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BREBN (Nucleoside diphosphate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=ndk PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.710e-44
Identity = 79/147 (53.74%), Postives = 110/147 (74.83%), Query Frame = -3
Query:  192 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWV 632
            ME+TF+ +KPDGVQR LI EI+SRFE+KG++LV  K++  S+E A++HY + KERPFF  L +F++SGPV AMVW+G  VIT  R ++G T+P  +  GTIRGD A  VG NIIHGSD PE+A+ EI LWF  E+++++    ++W+
Sbjct:    1 MEKTFLMVKPDGVQRNLIGEIVSRFEKKGYQLVGAKLMTVSRELAEEHYAEHKERPFFGELVDFITSGPVFAMVWQGNNVITTARAMMGKTNPVDAASGTIRGDFATSVGMNIIHGSDSPESAEREIGLWFSAEEVLSFEKTIQRWI 147          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SYMTH (Nucleoside diphosphate kinase OS=Symbiobacterium thermophilum GN=ndk PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.315e-43
Identity = 82/148 (55.41%), Postives = 113/148 (76.35%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            MER+F+ +KPDGVQRGLI E+ISR ER+G KLVA K++  S+E A++HY  LK++PFF  L EF++SGPV+AMVWEG   I+  RK +GAT+P  +EPGTIR D A  V  N++HGSDGPE+A+ EI+LWF  E   +Y+ + ++W++
Sbjct:    1 MERSFVMVKPDGVQRGLIGEVISRLERRGLKLVAAKLMRVSRELAEEHYAQLKDKPFFPSLIEFITSGPVMAMVWEGPNAISIIRKTMGATNPANAEPGTIRADFACDVSYNVVHGSDGPESAEREIRLWF-GEVEPSYSRSVDRWIF 147          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BRUMA (Nucleoside diphosphate kinase OS=Brugia malayi GN=NDK PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.718e-43
Identity = 82/148 (55.41%), Postives = 109/148 (73.65%), Query Frame = -3
Query:  186 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 629
            ERTFI IKPD VQRGLI +I  RFE++G+KLVA+K++  +K   + HY +L+ +PFFN L  ++SSGPVIAMVWEG  V+   R+++GAT+P  S PGTIRGD ++  GRNI+HGSD   +A+ EI  WFKPE+L  ++S    WVYE
Sbjct:    6 ERTFICIKPDAVQRGLIGKIFERFEQRGYKLVAMKMLKATKSHLEIHYQELQGKPFFNDLVGYMSSGPVIAMVWEGLDVVKQARQMLGATNPLNSMPGTIRGDFSIQTGRNIVHGSDSLPSAEREITHWFKPEELCEWSSATATWVYE 153          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_OCEIH (Nucleoside diphosphate kinase OS=Oceanobacillus iheyensis GN=ndk PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.827e-43
Identity = 79/148 (53.38%), Postives = 107/148 (72.30%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TF+ +KPDGVQR LI EI+ RFE KG+KL   K++  S + A+ HY + KERPFF  L +F++SGPV AMVWEGE VI   RK++G T+P +++P TIRGD  + VG+NIIHGSD  E+A+ EI L+F   ++V+Y   A  W+Y
Sbjct:    1 MEKTFLMVKPDGVQRELIGEIVKRFETKGYKLAGAKLMQVSNQLAETHYSEHKERPFFGELVDFITSGPVFAMVWEGENVIATARKMMGKTNPLEADPSTIRGDFGISVGKNIIHGSDSAESAEREITLFFTENEIVSYEKQANNWIY 148          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_HELMI (Nucleoside diphosphate kinase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=ndk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.527e-43
Identity = 78/149 (52.35%), Postives = 114/149 (76.51%), Query Frame = -3
Query:  186 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 632
            MERT++ IKPDGVQRGL+ EIISRFE+KGFKLV +K +  ++E A+KHY +   +PFF GL +++ SGPV+AM WEG+ +++  R+++GAT+P K+ PGTIRG  AV +GRNIIHGSD P +A+ E+ ++F+ ++LV +    + W+ E
Sbjct:    1 MERTYLMIKPDGVQRGLVGEIISRFEKKGFKLVGMKFLRLTREMAEKHYAEHVGKPFFAGLVDYIISGPVVAMCWEGKDIVSVSREMMGATNPAKAAPGTIRGTYAVDIGRNIIHGSDSPASAERELAIYFQSDELVEWDRTLQGWLTE 149          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_ARCFU (Nucleoside diphosphate kinase OS=Archaeoglobus fulgidus GN=ndk PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.527e-43
Identity = 76/151 (50.33%), Postives = 114/151 (75.50%), Query Frame = -3
Query:  180 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYESK 632
            MERTF+ +KPDGVQRGL+ E+I R ERKG K+VA+K++  ++E A+ HY + +E+PFF+ L ++++SGPV+AMV EG+  I   R L+GAT+P ++ PGTIRGD  + VGRN++H SD P++A+ EI L+F  +++VN+    E W+YE +
Sbjct:    1 MERTFVMVKPDGVQRGLVGEVIGRLERKGLKIVAMKMLWIAREMAENHYAEHREKPFFSALVDYITSGPVVAMVVEGKNAIKVVRTLVGATNPAEAAPGTIRGDFGLDVGRNVVHASDSPQSAEREISLFFSDDEIVNWEKADEDWIYEER 151          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_BACCR (Nucleoside diphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ndk PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 8.525e-43
Identity = 78/148 (52.70%), Postives = 110/148 (74.32%), Query Frame = -3
Query:  189 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVY 632
            ME+TF+ +KPDGVQR  I EI++RFE+KGF+LV  K++  + E A +HY + KE+PFF  L +F++SGPV AMVW+GEGV+   R ++G T P ++ PGTIRGD  V V +NIIHGSD  E+A+ EI ++FK E+LV+Y+    +W+Y
Sbjct:    1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHKEKPFFGELVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIAIFFKEEELVDYSKLMNEWIY 148          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_SCHPO (Nucleoside diphosphate kinase OS=Schizosaccharomyces pombe GN=ndk1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.454e-42
Identity = 78/148 (52.70%), Postives = 108/148 (72.97%), Query Frame = -3
Query:  186 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 629
            E+TFIA+KPD VQRGLI  IIS+FE KG+KL A+K +VPS++  ++HY + K +PF+  L  F++SGPV AM+WEG+  +  GR ++GA++P  S PGTIRGD  + +GRN+ HGSD  E+A  EIKLWF+P ++  Y    E W+YE
Sbjct:    4 EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKLVGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIESANREIKLWFQPSEIQVYDRTIEPWIYE 151          
BLAST of CF833984 vs. ExPASy Swiss-Prot
Match: NDK_UNCMA (Nucleoside diphosphate kinase OS=Uncultured methanogenic archaeon RC-I GN=ndk PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.231e-42
Identity = 79/150 (52.67%), Postives = 109/150 (72.67%), Query Frame = -3
Query:  186 EMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEDLVNYTSNAEKWVYE 635
            E ERTF+ +KPDGVQRGL+ EIISRFER+G K+V +K++  S+E A++HY +   +PFF GL  F+ SGP +AMV EG+  ++  R ++G T P +S PGTIRGD A+ +GRN+IH SD PE+AK EI L+FK  ++  Y    E+W+YE
Sbjct:    3 ERERTFVMVKPDGVQRGLVGEIISRFERRGLKIVGMKMLEVSEELAKQHYAEHAAKPFFPGLVSFIRSGPTVAMVIEGKDAVSMVRSMLGKTKPIESAPGTIRGDFALDMGRNVIHASDSPESAKREISLYFKTSEIATYARIDEQWLYE 152          
The following BLAST results are available for this feature:
BLAST of CF833984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_DESRM5.904e-4454.36Nucleoside diphosphate kinase OS=Desulfotomaculum ... [more]
NDK_BREBN7.710e-4453.74Nucleoside diphosphate kinase OS=Brevibacillus bre... [more]
NDK_SYMTH1.315e-4355.41Nucleoside diphosphate kinase OS=Symbiobacterium t... [more]
NDK_BRUMA1.718e-4355.41Nucleoside diphosphate kinase OS=Brugia malayi GN=... [more]
NDK_OCEIH3.827e-4353.38Nucleoside diphosphate kinase OS=Oceanobacillus ih... [more]
NDK_HELMI6.527e-4352.35Nucleoside diphosphate kinase OS=Heliobacterium mo... [more]
NDK_ARCFU6.527e-4350.33Nucleoside diphosphate kinase OS=Archaeoglobus ful... [more]
NDK_BACCR8.525e-4352.70Nucleoside diphosphate kinase OS=Bacillus cereus (... [more]
NDK_SCHPO1.454e-4252.70Nucleoside diphosphate kinase OS=Schizosaccharomyc... [more]
NDK_UNCMA4.231e-4252.67Nucleoside diphosphate kinase OS=Uncultured methan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04K21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833984 ID=CF833984; Name=CF833984; organism=Citrus sinensis; type=EST; length=832bp
TTTTTTTTTTTTTTTTTGGTGTAGCAAATTATTGCCGAAATTCCACTTTT
GGATCGTAACAAAGTTGTGTTTTACCTCATCTCAACAGAAACAATTTTAT
TCCACCAATTTATGCTTCTAATCCCACTATTCATGTGGGACCTAAGTTTC
TAATAAAAGTAAGAGAAAAATTGTAATCACTTGGATTCATAGACCCACTT
CTCTGCATTGCTTGTGTAATTAACCAAGTCTTCGGGTTTGAACCACAATT
TAATCTCATCCTTGGCGGTCTCGGGGCCATCACTTCCATGAATGATGTTT
CTTCCAACAACAACAGCTAGATCGCCTCTGATTGTTCCAGGTTCTGATTT
CTGAGGATCTGTGGCTCCAATGAGTTTGCGACCATACGTAATAACTCCCT
CTCCTTCCCATACCATGGCAATGACTGGACCAGAGCTAAGGAACTCGCAC
AGGCCATTAAAGAAGGGTCTTTCCTTCAGATCATGATAATGTTTTTGTGC
AAACTCTTTTGATGGAACTACTATCTTAATGGCCACAAGCTTAAAGCCTT
TGCGCTCAAAGCGAGAGATGATTTCTGAAATCAGTCCTCTTTGCACCCCA
TCTGGCTTGATGGCAATGAAAGTGCGTTCCATCTCTGCAGCATGTACTTC
CTGCTCCTGGAGCGTGTAAGCTGCAGCAGGAATTGCAATGGCTCCCGAGA
GCCATGATCGAGATGCAGTTGAGGAACCAGCCCTCCCAAAACTTGAAACA
AGATAAGGCAACTTCCCACTGAATGTAACTGCCGCTGCAGCAGATACAGC
TCGCCCTTCGGAGTAAAAGCGCGAATTCTTGG
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