CF833990

Overview
NameCF833990
Unique NameCF833990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.553e-28
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = -3
Query:   15 PPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKKKV 407
            PPFL KT+++              +  SF+VW+P  FA   LP++FKHNNFSSF+RQLNTYGFRK+DP++WEFAN+ F+RGQ   LK I RR+P+ S+   +    GT L E  + GL ++I+RLK+ K +
Sbjct:   36 PPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPL-SYLPGSQQALGTCL-EVGQFGLDEEIDRLKRDKNI 164          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSFB4_ARATH (Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = -3
Query:  129 VMDDGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRK 443
            +M +GQG +   P FL KTY++               + +F+VW PP+FARDLLP YFKHNNFSSF+RQLNTYGFRK+ P++WEFANE F RG+   L  IHRRK
Sbjct:   22 LMVEGQGKAVPAP-FLTKTYQLVDDPATDHVVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRK 125          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.655e-27
Identity = 64/142 (45.07%), Postives = 88/142 (61.97%), Query Frame = -3
Query:   24 DGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESER-----QGLRDDIERLKKK 434
            +   ++N + PF+ KTY+M              ++ SFIV +P DF++ +LP YFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   L NI RRK       Q+L   G  + E ER     + L  +I+R+ ++
Sbjct:    7 NNNNNNNVIAPFIVKTYQMVNDPSTDWLITWGPAHNSFIVVDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHARGMYGQDLE-DGEIVREIERLKEEQRELEAEIQRMNRR 147          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSFA8_ARATH (Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.288e-27
Identity = 67/140 (47.86%), Postives = 88/140 (62.86%), Query Frame = -3
Query:   15 GQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXS-NKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKKKV 431
            G  SS+S+ PFL K Y+M              S + SF++ +   F+  LLPKYFKH+NFSSFIRQLN YGFRKVD ++WEFAN+ FVRGQ + LKN+ RRK V S S Q+ H   +     E+ GL  +++ LK  K+V
Sbjct:   10 GSSSSSSVAPFLRKCYDMVDDSTTDSIISWSPSADNSFVILDTTVFSVQLLPKYFKHSNFSSFIRQLNIYGFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQS-SEQSKHESTSTTYAQEKSGLWKEVDILKGDKQV 148          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 57/98 (58.16%), Postives = 69/98 (70.41%), Query Frame = -3
Query:  123 SLP-PFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 413
            SLP PFL KTY++                 +F+VW P +FARDLLPKYFKHNNFSSF+RQLNTYGFRK+ P++WEFAN+ F RG+   L +IHRRK V
Sbjct:   34 SLPTPFLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVV 131          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.212e-27
Identity = 64/140 (45.71%), Postives = 82/140 (58.57%), Query Frame = -3
Query:   15 PPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKP---------VHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKKKV 407
            PPFL KTYE+              +  SF+VW+   FA  LLP+YFKH+NFSSF+RQLNTYGFRKVDP++WEFANE F+RG+ E LK I RR+P           S S+Q+         E  + G    + RL++ K V
Sbjct:   52 PPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRRPPPSSPPSSSSSSSSSQHQQQPAAACLEVGQFGRDGVVNRLQRDKSV 191          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.829e-26
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = -3
Query:  114 MDDGQGSSN-SLP-PFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSH 440
            M  G+ SS  S+P PFL KT+ +                 SFIVWNP DFA+DLLPK+FKHNNFSSF+RQLNTYGF+KV P++WEF+N+ F RG+   L+ I RRK   +H
Sbjct:    9 MITGESSSQRSIPTPFLTKTFNLVEDSSIDDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITTTH 119          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.389e-26
Identity = 57/102 (55.88%), Postives = 70/102 (68.63%), Query Frame = -3
Query:  129 GQGSSNSLP-PFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRK 431
            G  S  S+P PFL KTY++                 +FIVW P +FARDLLPKYFKHNNFSSF+RQLNTYGFRKV P++WEF+N+ F RG+   L++I RRK
Sbjct:   49 GGDSQRSIPTPFLTKTYQLVEDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRK 150          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.389e-26
Identity = 62/132 (46.97%), Postives = 80/132 (60.61%), Query Frame = -3
Query:   18 PP--FLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKKK 407
            PP  FL KTY +               N SFIVW P  FA   LP+ FKHNNFSSF+RQLNTYGF+K+D E+WEFANE F++G+   LKNI RRK       Q+L G+   L   +R  L  ++ RL++K++
Sbjct:   16 PPTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSSQTQTQSLEGEIHEL-RRDRMALEVELVRLRRKQE 146          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.121e-26
Identity = 55/101 (54.46%), Postives = 66/101 (65.35%), Query Frame = -3
Query:  129 GQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRK 431
            GQ       PFL KTY++                 +F+VW P +FARDLLPKYFKHNNFSSF+RQLNTYGFRK+ P++WEFAN+ F RG+   L  IHRRK
Sbjct:   39 GQQQRTVPTPFLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRK 139          
The following BLAST results are available for this feature:
BLAST of CF833990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
HFA2D_ORYSJ2.553e-2848.09Heat stress transcription factor A-2d OS=Oryza sat... [more]
HSFB4_ARATH1.267e-2755.24Heat stress transcription factor B-4 OS=Arabidopsi... [more]
HSFC1_ARATH1.655e-2745.07Heat stress transcription factor C-1 OS=Arabidopsi... [more]
HSFA8_ARATH6.288e-2747.86Heat stress transcription factor A-8 OS=Arabidopsi... [more]
HFB2C_ORYSJ8.212e-2758.16Heat stress transcription factor B-2c OS=Oryza sat... [more]
HFA2A_ORYSJ8.212e-2745.71Heat stress transcription factor A-2a OS=Oryza sat... [more]
HFB2A_ARATH1.829e-2653.15Heat stress transcription factor B-2a OS=Arabidops... [more]
HFB2B_ARATH2.389e-2655.88Heat stress transcription factor B-2b OS=Arabidops... [more]
HFA6A_ARATH2.389e-2646.97Heat stress transcription factor A-6a OS=Arabidops... [more]
HFB2B_ORYSJ3.121e-2654.46Heat stress transcription factor B-2b OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04L03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833990 ID=CF833990; Name=CF833990; organism=Citrus sinensis; type=EST; length=604bp
GAGAACAGCCCCTAAACTTTTTTTTTTTTTTTTAACCTCTCAATATCATC
CCTGAGACCCTGTCTTTCTGATTCAGTTAATGGAGTTCCTTGTCCATGTA
GATTCTGATTAGAATGGCTATGAACTGGCTTTCGTCTATGGATGTTCTTC
AAACGTTCAGGCTGACCTCTCACAAAATCTTCATTTGCAAATTCCCATTG
TTCAGGATCAACTTTTCTAAAACCATATGTGTTGAGCTGTCTGATGAAGC
TTGAGAAGTTATTGTGCTTAAAGTATTTTGGTAACAAATCCCTAGCAAAA
TCTGGTGGATTCCACACAATAAAGCTCTTATTACTTGAACTCCAGGACAC
AGTCAAATCTGTCGAAGAATCATCTACCATCTCATATGTTTTTGCAAGAA
AGGGAGGAAGTGAATTTGAACTACCTTGGCCGTCATCCATCACAAACTAA
AGGATCCAATCACGCAGTCCCCAAACTCAATACCCAAAACTAAACCATAA
ACCAGTGCAAAATCCTATTTCCAGGGAAAGTCAAACACTTAATTTTCTTC
AATACCGCAACAGAATCTAAGCTGGAAAGCTCAAACTTCTGATTATTAGT
AAGC
back to top