CF833990

Overview
NameCF833990
Unique NameCF833990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10563 contig Csv1_Contig10563:709..1312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.076e-26
Identity = 55/96 (57.29%), Postives = 66/96 (68.75%), Query Frame = -3
Query:  117 PFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHS 404
            PFL KTY++                 +F+VW   +FA+DLLPKYFKHNNFSSF+RQLNTYGFRK+ P++WEFANE+F RGQ E L  I RRK V S
Sbjct:    9 PFLLKTYQLVDDAATDDVISWNEIGTTFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVTS 104          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.952e-26
Identity = 55/93 (59.14%), Postives = 65/93 (69.89%), Query Frame = -3
Query:  129 PFLAKTYEMXXXXXXXXXXXXXXSNKS-FIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRK 404
            PFL KTY++                 S F+VW PP+FARD+LP YFKHNNFSSF+RQLNTYGFRKV PE+WEFANE F +G+ + L  IHRRK
Sbjct:   24 PFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRK 116          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFB4B_ORYSJ (Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.079e-26
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = -3
Query:  102 GQGSSNSLP-PFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRK------------PVHSHSNQN 431
            G  +   +P PFL KTY++               + +F+VW PP+FARDLLP YFKHNNFSSF+RQLNTYGFRK+  ++WEFANE F +G    L  IHRRK            P H H + N
Sbjct:   24 GAAAGKPVPAPFLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQPPPPPMPHQPYHHHHHLN 146          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFB4D_ORYSJ (Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.549e-25
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  129 PFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRK 404
            PFL+KTY++                 +F+VW PP+FARDLLP YFKHNNFSSF+RQLNTYGFRK+  ++WEFANE F +G    L  IHRRK
Sbjct:   36 PFLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRK 127          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSFA3_ORYSJ (Heat stress transcription factor A-3 OS=Oryza sativa subsp. japonica GN=HSFA3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.642e-25
Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = -3
Query:   21 LPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKK 410
            LPPFL+KTY++              +  SF+VW+P  FARD+LP +FKHNNFSSF+RQLNTYGFRKV  ++WEFA+EDF+R     LK I RR+   +  +      G     S   GL  ++  L+++K
Sbjct:   65 LPPFLSKTYDLVCEPELDGVISWGHAGNSFVVWDPSAFARDVLPHHFKHNNFSSFVRQLNTYGFRKVHADRWEFAHEDFLRHSKHLLKKIVRRRSSPTQQS------GLQPGSSGESGLDPELNTLRREK 188          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA7A_ARATH (Heat stress transcription factor A-7a OS=Arabidopsis thaliana GN=HSFA7A PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.450e-25
Identity = 61/133 (45.86%), Postives = 84/133 (63.16%), Query Frame = -3
Query:   18 NSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDDIERLKKKKK 416
            N+ PPFL KT+EM                 SF+VW+   F+  LLP++FKH+NFSSFIRQLNTYGFRK++ E+WEFANE+F+ GQ + LKNI RR P    S+ + H     L   E+Q L  +I  L+++++
Sbjct:   25 NAPPPFLTKTFEMVDDPNTDHIVSWNRGGTSFVVWDLHSFSTILLPRHFKHSNFSSFIRQLNTYGFRKIEAERWEFANEEFLLGQRQLLKNIKRRNPFTPSSSPS-HDACNEL-RREKQVLMMEIVSLRQQQQ 155          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.885e-25
Identity = 54/97 (55.67%), Postives = 66/97 (68.04%), Query Frame = -3
Query:  129 PFLAKTYEMXXXXXXXXXXXXXXSN-----KSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRK 404
            PFL KTY++               +      SF+VW PP+FARD+LP YFKH+NFSSF+RQLNTYGFRKV PE+WEFANE F +G+ + L  IHRRK
Sbjct:   25 PFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRK 121          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.004e-24
Identity = 58/116 (50.00%), Postives = 69/116 (59.48%), Query Frame = -3
Query:   60 PPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQ 407
            PPFL KTY++                  F+VW P +FARDLLP  FKH NFSSF+RQLNTYGFRKV   +WEF+NE F +GQ E + NI RRK  H   N++ H Q  P T    Q
Sbjct:   39 PPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNH-QVVPTTTMVNQ 153          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSFA9_ARATH (Heat stress transcription factor A-9 OS=Arabidopsis thaliana GN=HSFA9 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.712e-24
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = -3
Query:   18 LPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLRDD-----IERLKKKKK 410
            + PFL KT+E+              + KSFI+W+  +F+ +LLPKYFKH NFSSFIRQLN+YGF+KVD ++WEFANE F  G+   LKNI RR       N+      T  TE+E + L+++     +E LK K++
Sbjct:   69 ITPFLRKTFEIVDDKVTDPVVSWSPTRKSFIIWDSYEFSENLLPKYFKHKNFSSFIRQLNSYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKE---ASTTTTETEVESLKEEQSPMRLEMLKLKQQ 201          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HFA7B_ARATH (Heat stress transcription factor A-7b OS=Arabidopsis thaliana GN=HSFA7B PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.815e-24
Identity = 59/138 (42.75%), Postives = 78/138 (56.52%), Query Frame = -3
Query:   18 PFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV-------HSHSNQNLHGQGT--PLTESERQGLRDDIERLKKKKK 404
            PFL KT+EM                 SF+VW+P  F+  +LP YFKHNNFSSF+RQLNTYGFRK++ E+WEF NE F+ GQ + LK+I RR          +S S    H  G   P    ER  L  +I  L+++++
Sbjct:   28 PFLTKTFEMVGDPNTNHIVSWNRGGISFVVWDPHSFSATILPLYFKHNNFSSFVRQLNTYGFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTSSSSPPSLNYSQSQPEAHDPGVELPQLREERHVLMMEISTLRQEEQ 165          
The following BLAST results are available for this feature:
BLAST of CF833990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
HSF24_SOLPE4.076e-2657.29Heat shock factor protein HSF24 OS=Solanum peruvia... [more]
HFB4C_ORYSJ6.952e-2659.14Heat stress transcription factor B-4c OS=Oryza sat... [more]
HFB4B_ORYSJ9.079e-2647.15Heat stress transcription factor B-4b OS=Oryza sat... [more]
HFB4D_ORYSJ1.549e-2556.52Heat stress transcription factor B-4d OS=Oryza sat... [more]
HSFA3_ORYSJ2.642e-2544.62Heat stress transcription factor A-3 OS=Oryza sati... [more]
HFA7A_ARATH3.450e-2545.86Heat stress transcription factor A-7a OS=Arabidops... [more]
HFB4A_ORYSJ5.885e-2555.67Putative heat stress transcription factor B-4a OS=... [more]
HSFB3_ARATH1.004e-2450.00Heat stress transcription factor B-3 OS=Arabidopsi... [more]
HSFA9_ARATH1.712e-2444.12Heat stress transcription factor A-9 OS=Arabidopsi... [more]
HFA7B_ARATH3.815e-2442.75Heat stress transcription factor A-7b OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04L03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833990 ID=CF833990; Name=CF833990; organism=Citrus sinensis; type=EST; length=604bp
GAGAACAGCCCCTAAACTTTTTTTTTTTTTTTTAACCTCTCAATATCATC
CCTGAGACCCTGTCTTTCTGATTCAGTTAATGGAGTTCCTTGTCCATGTA
GATTCTGATTAGAATGGCTATGAACTGGCTTTCGTCTATGGATGTTCTTC
AAACGTTCAGGCTGACCTCTCACAAAATCTTCATTTGCAAATTCCCATTG
TTCAGGATCAACTTTTCTAAAACCATATGTGTTGAGCTGTCTGATGAAGC
TTGAGAAGTTATTGTGCTTAAAGTATTTTGGTAACAAATCCCTAGCAAAA
TCTGGTGGATTCCACACAATAAAGCTCTTATTACTTGAACTCCAGGACAC
AGTCAAATCTGTCGAAGAATCATCTACCATCTCATATGTTTTTGCAAGAA
AGGGAGGAAGTGAATTTGAACTACCTTGGCCGTCATCCATCACAAACTAA
AGGATCCAATCACGCAGTCCCCAAACTCAATACCCAAAACTAAACCATAA
ACCAGTGCAAAATCCTATTTCCAGGGAAAGTCAAACACTTAATTTTCTTC
AATACCGCAACAGAATCTAAGCTGGAAAGCTCAAACTTCTGATTATTAGT
AAGC
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