CF833990

Overview
NameCF833990
Unique NameCF833990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10563 contig Csv1_Contig10563:709..1312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF2_HUMAN (Heat shock factor protein 2 OS=Homo sapiens GN=HSF2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = -3
Query:  132 SNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANEDFVRGQPERLKNIHRR 419
            S+++P FL+K + +              + +SF+V +   FA+++LPKYFKHNN +SF+RQLN YGFRKV                EF +  F +GQ + L+NI R+
Sbjct:    4 SSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIVKQERDGPVEFQHPYFKQGQDDLLENIKRK 110          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF4_MOUSE (Heat shock factor protein 4 OS=Mus musculus GN=Hsf4 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  126 LPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANEDFVRGQPERLKNIHRRKP 410
            +P FL K + +              S  SF+V +   FA+++LP+YFKH+N +SF+RQLN YGFRKV           + +  EF +  FVRG+ + L+ + R+ P
Sbjct:   17 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVP 122          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF4_HUMAN (Heat shock factor protein 4 OS=Homo sapiens GN=HSF4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  126 LPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANEDFVRGQPERLKNIHRRKP 410
            +P FL K + +              S  SF+V +   FA+++LP+YFKH+N +SF+RQLN YGFRKV           + +  EF +  FVRG+ + L+ + R+ P
Sbjct:   18 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVP 123          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF4_CANFA (Heat shock factor protein 4 OS=Canis familiaris GN=HSF4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  126 LPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANEDFVRGQPERLKNIHRRKP 410
            +P FL K + +              S  SF+V +   FA+++LP+YFKH+N +SF+RQLN YGFRKV           + +  EF +  FVRG+ + L+ + R+ P
Sbjct:   17 VPAFLGKLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLNMYGFRKVVSIEQGGLLRPERDHVEFQHPSFVRGREQLLERVRRKVP 122          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF_DROME (Heat shock factor protein OS=Drosophila melanogaster GN=Hsf PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 38/111 (34.23%), Postives = 55/111 (49.55%), Query Frame = -3
Query:  132 DGQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV----------DPEQWEFANEDFVRGQPERLKNIHRR 434
            D     + +P FLAK + +                +SF++ N   FA++LLP  +KHNN +SFIRQLN YGF K+          D ++ EF++  F R  P  L  I R+
Sbjct:   38 DAAAIGSGVPAFLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 148          
BLAST of CF833990 vs. ExPASy Swiss-Prot
Match: HSF3_CHICK (Heat shock factor protein 3 OS=Gallus gallus GN=HSF3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.836e-11
Identity = 41/111 (36.94%), Postives = 56/111 (50.45%), Query Frame = -3
Query:  132 GQGSSNSLPPFLAKTYEMXXXXXXXXXXXXXXSNKSFIVWNPPDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANEDFVRGQPERLKNIHRR 431
            G   +  +P FLAK + +              + ++F + +   FA++LLPKYFKHNN SSFIRQLN YGFRKV                EF +  F +G    L+NI R+
Sbjct:    9 GAPGAAPVPGFLAKLWALVEDPQSDDVICWSRNGENFCILDEQRFAKELLPKYFKHNNISSFIRQLNMYGFRKVVALENGMITAEKNSVIEFQHPFFKQGNAHLLENIKRK 119          
The following BLAST results are available for this feature:
BLAST of CF833990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
HSF2_HUMAN1.964e-1237.38Heat shock factor protein 2 OS=Homo sapiens GN=HSF... [more]
HSF4_MOUSE5.713e-1235.85Heat shock factor protein 4 OS=Mus musculus GN=Hsf... [more]
HSF4_HUMAN5.713e-1235.85Heat shock factor protein 4 OS=Homo sapiens GN=HSF... [more]
HSF4_CANFA5.713e-1235.85Heat shock factor protein 4 OS=Canis familiaris GN... [more]
HSF_DROME1.662e-1134.23Heat shock factor protein OS=Drosophila melanogast... [more]
HSF3_CHICK2.836e-1136.94Heat shock factor protein 3 OS=Gallus gallus GN=HS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04L03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04L03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF833990 ID=CF833990; Name=CF833990; organism=Citrus sinensis; type=EST; length=604bp
GAGAACAGCCCCTAAACTTTTTTTTTTTTTTTTAACCTCTCAATATCATC
CCTGAGACCCTGTCTTTCTGATTCAGTTAATGGAGTTCCTTGTCCATGTA
GATTCTGATTAGAATGGCTATGAACTGGCTTTCGTCTATGGATGTTCTTC
AAACGTTCAGGCTGACCTCTCACAAAATCTTCATTTGCAAATTCCCATTG
TTCAGGATCAACTTTTCTAAAACCATATGTGTTGAGCTGTCTGATGAAGC
TTGAGAAGTTATTGTGCTTAAAGTATTTTGGTAACAAATCCCTAGCAAAA
TCTGGTGGATTCCACACAATAAAGCTCTTATTACTTGAACTCCAGGACAC
AGTCAAATCTGTCGAAGAATCATCTACCATCTCATATGTTTTTGCAAGAA
AGGGAGGAAGTGAATTTGAACTACCTTGGCCGTCATCCATCACAAACTAA
AGGATCCAATCACGCAGTCCCCAAACTCAATACCCAAAACTAAACCATAA
ACCAGTGCAAAATCCTATTTCCAGGGAAAGTCAAACACTTAATTTTCTTC
AATACCGCAACAGAATCTAAGCTGGAAAGCTCAAACTTCTGATTATTAGT
AAGC
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