CF834006

Overview
NameCF834006
Unique NameCF834006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834006 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGL (Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.623e-13
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1
Query:  187 HTKGDMFQRVPKGDAIFMKWILHDWNDEHCLKGLKNCCKSIPEDGKV 327
            H  GDMF  +P GDA+FMKWI HDW+DEHC K LKNC  ++P +G+V
Sbjct:  229 HVGGDMFVNIPNGDAVFMKWICHDWSDEHCAKLLKNCYDALPVNGRV 275          
BLAST of CF834006 vs. ExPASy Swiss-Prot
Match: COMT1_CAPCH (Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.623e-13
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1
Query:  196 GDMFQRVPKGDAIFMKWILHDWNDEHCLKGLKNCCKSIPEDGKV 327
            GDMF  VPK DAIFMKWI HDW+D+HC+K LKNC +++P +GKV
Sbjct:  246 GDMFVSVPKADAIFMKWICHDWSDDHCIKLLKNCYEALPANGKV 289          
BLAST of CF834006 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.769e-13
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  187 HTKGDMFQRVPKGDAIFMKWILHDWNDEHCLKGLKNCCKSIPEDGKV 327
            H  GDMF  VP GDAI MKWILHDW+D HC   LKNC  ++PE+GKV
Sbjct:  248 HVGGDMFASVPAGDAILMKWILHDWSDAHCATLLKNCYDALPENGKV 294          
BLAST of CF834006 vs. ExPASy Swiss-Prot
Match: OMT1_ORYSJ (Quercetin 3-O-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=ROMT-9 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.723e-13
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 1
Query:  187 HTKGDMFQRVPKG-DAIFMKWILHDWNDEHCLKGLKNCCKSIPEDGKV 327
            H  GDMF  VP+G DAI MKWILHDW+DEHC + LKNC  ++PE GKV
Sbjct:  251 HVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKV 298          
BLAST of CF834006 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.062e-12
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 1
Query:  187 HTKGDMFQRVPKGDAIFMKWILHDWNDEHCLKGLKNCCKSIPEDGKV 327
            H  G+MF+ +P+ DAIFMKW+LHDW+DEHC+K L  C +S+ + GK+
Sbjct:  248 HVGGNMFESIPQADAIFMKWVLHDWSDEHCVKILNKCYESLAKGGKI 294          
The following BLAST results are available for this feature:
BLAST of CF834006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
COMT1_EUCGL1.623e-1361.70Caffeic acid 3-O-methyltransferase (Fragment) OS=E... [more]
COMT1_CAPCH1.623e-1368.18Caffeic acid 3-O-methyltransferase OS=Capsicum chi... [more]
COMT1_MAIZE2.769e-1365.96Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
OMT1_ORYSJ4.723e-1366.67Quercetin 3-O-methyltransferase 1 OS=Oryza sativa ... [more]
IMT1_MESCR3.062e-1255.32Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04L16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834006 ID=CF834006; Name=CF834006; organism=Citrus sinensis; type=EST; length=329bp
TTTTTTTCAGACCTTAAAGCTTTTCTTTGGATGATTTAAAGGTTTTCCAG
GTCTTTAACAAGAGGGCATTAATAAATTCAACTAGCCTAAGTTTAAATAA
CCCTTAATTCAAAGGGACAAGCCAGACTCTTCATCTTCTTCGAGATCACC
ACTGTAAATAAAATAGAGAGCCCAAATCAATCCACACACACCAAAGGTGA
TATGTTCCAAAGGGTTCCAAAAGGTGATGCCATTTTTATGAAGTGGATAC
TGCACGATTGGAATGATGAACATTGCTTGAAGGGGCTGAAGAATTGCTGC
AAAAGCATTCCGGAAGATGGAAAGGTAAT
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