CF834028

Overview
NameCF834028
Unique NameCF834028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO1_CHICK (Small ubiquitin-related modifier 1 OS=Gallus gallus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   27 MSGVTNTPQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            MS     P  ED     +  +I L+  GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSAEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRITDNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO1_BOVIN (Small ubiquitin-related modifier 1 OS=Bos taurus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   27 MSGVTNTPQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            MS     P  ED     +  +I L+  GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO1_CERNI (Small ubiquitin-related modifier 1 OS=Cervus nippon GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 3
Query:   27 MSGVTNTPQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            MS     P  ED     +  +I L+  GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   27 MSGVTNTPQEEDKKPNDQSA-HINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            MS     P  ED     +   +I L+  GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSSEDLGDKKEGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 3
Query:   27 MSGVTNTPQEEDKKPNDQSA-HINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            MS     P  ED     +   +I L+  GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSSEDLGDKKEGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   54 EEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            ++  +  D + +I ++  GQD NEV FR+K  T + KL  +Y DR  V +NS+ FLFDGRR+  + TP  LEMED D I+    Q GG
Sbjct:    3 DDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO4_PIG (Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.413e-16
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 320
            P+E  K  N+   HINL+  GQDG+   F+I+R T L KLM AYC+RQ + +  I F  DG+ +    TP +LE+ED D ID +  QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRFRVDGQPINETHTPAQLELEDEDTIDVLQQQTGGV 94          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO4_HUMAN (Small ubiquitin-related modifier 4 OS=Homo sapiens GN=SUMO4 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.606e-15
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 3
Query:   48 PQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 320
            P EE K  N+   HINL+  GQDG+ V F+IKR T L KLM AYC+ + + +  I F F G+ + G   P +LEMED D ID     TGG+
Sbjct:    6 PTEEVKTENNN--HINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGV 94          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.577e-15
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 3
Query:   27 MSGVTNTPQEEDKKPNDQSAHINLQDKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 320
            MS     P  +D        +I L+  GQD +E+ F++K +T LKKL  +Y  RQ V ++++ FLF+G+R+    TP EL MED D I+    QTGG+
Sbjct:    1 MSDTDTKPSGQDGGDQKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGGL 98          
BLAST of CF834028 vs. ExPASy Swiss-Prot
Match: SMT3_YEAST (Ubiquitin-like protein SMT3 OS=Saccharomyces cerevisiae GN=SMT3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.672e-15
Identity = 43/97 (44.33%), Postives = 63/97 (64.95%), Query Frame = 3
Query:   30 SGVTNTPQEEDKKPNDQSAHINLQDKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 317
            S V    + E K       HINL  K  DG+ E+FF+IK++T L++LM A+  RQ  E++S+ FL+DG R++ +QTP++L+MED D I+A   Q GG
Sbjct:    4 SEVNQEAKPEVKPEVKPETHINL--KVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 98          
The following BLAST results are available for this feature:
BLAST of CF834028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_CHICK1.112e-1643.30Small ubiquitin-related modifier 1 OS=Gallus gallu... [more]
SUMO1_BOVIN1.112e-1643.30Small ubiquitin-related modifier 1 OS=Bos taurus G... [more]
SUMO1_CERNI1.452e-1643.30Small ubiquitin-related modifier 1 OS=Cervus nippo... [more]
SUMO1_XENTR4.226e-1643.88Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA4.226e-1643.88Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO_CAEEL9.413e-1644.32Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO4_PIG9.413e-1646.15Small ubiquitin-related modifier 4 OS=Sus scrofa G... [more]
SUMO4_HUMAN1.606e-1547.25Small ubiquitin-related modifier 4 OS=Homo sapiens... [more]
SUMO1_ONCMY3.577e-1539.80Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]
SMT3_YEAST4.672e-1544.33Ubiquitin-like protein SMT3 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04M10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04M10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834028 ID=CF834028; Name=CF834028; organism=Citrus sinensis; type=EST; length=557bp
GTGTGAGAGACGAAGCAGAAGACCTAATGTCAGGCGTCACGAACACTCCT
CAAGAGGAAGATAAGAAGCCCAACGATCAATCGGCTCACATCAATCTCCA
AGACAAGGGCCAGGATGGGAATGAGGTTTTCTTCAGGATCAAACGAAGCA
CCCAACTAAAGAAGCTTATGAATGCATACTGTGATAGACAATCTGTGGAG
CTGAACTCAATTGCCTTCTTGTTTGATGGTCGCCGTCTTCGAGGAGAGCA
AACCCCTGATGAGCTGGAAATGGAAGATGGTGATGAGATTGATGCCATGC
TGCACCAAACCGGAGGAATGCTGATGTTCTAATTATGTAATACTCGTTTG
AGAGCTTATTAGTAGTATTAATGTAAAACTATTAATGGATGGATGTAAGT
TATGCAGAGGCTCAAGATTGTGTATTTGTGATCTACACCATTATGTTTGT
GTTACCTAAGTATGTAGCTCTTTCTTCCAGAGCCCTGATCGTTGCTGTTT
ATATAGAGCTAGAATTTAAATATATCTGTGATGATTGGATCAAAAAAAAA
AAAAAAA
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