CF834033

Overview
NameCF834033
Unique NameCF834033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.803e-61
Identity = 110/193 (56.99%), Postives = 130/193 (67.36%), Query Frame = -1
Query:  188 FFAQTGHETTGG--WPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPG-QYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDCYTQGPYGPNLMAQSM 757
            F AQT HETTGG  W  AP G Y WGYCY R+++              PG QY+GRGP+QLTWN NY +CG  +GVDLLNNP LLATDP +SFKSA WFWMT Q PKPSCH+VII  W+PS +D  A R+PG+GL  NII GG+ECG+GWN+ V  RIGF+  +C   G+  G+NLDCY Q  Y       SM
Sbjct:  130 FLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.270e-60
Identity = 109/192 (56.77%), Postives = 132/192 (68.75%), Query Frame = -1
Query:  188 FFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDCYTQGPYGPNLMAQSM 757
            F AQT HETTGGWP AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG  +GVDLLNNP L+ATD V+SFKSAIWFWMT Q PKPSCH+VI   W PS  D  A+R+PG+G+  NII GG+ECG G +S V  RIGF+  +CG  G+ PGDNLDC  Q  +G  L+  ++
Sbjct:  127 FLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.965e-60
Identity = 108/192 (56.25%), Postives = 132/192 (68.75%), Query Frame = -1
Query:  188 FFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDCYTQGPYGPNLMAQSM 757
            FFAQT HETTGGW  AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG  +GVDLLNNP L+ATD ++SFKSAIWFWMT Q PKPSCH+VI   W PS  D  A+R+PG+G+  NII GG+ECG G +S V  RIGF+  +CG  G+ PGDNLDC  Q  +G  L+  ++
Sbjct:  125 FFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 2.965e-60
Identity = 111/194 (57.22%), Postives = 134/194 (69.07%), Query Frame = -1
Query:  188 FFAQTGHETTGG--WPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPL-PG-QYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDCYTQGPYGPNLMAQSM 757
            F AQT HETTGG  W  AP G YAWGYCY R+++  S         P  PG QY+GRGP+QL+WN NY +CG  +GVDLLNNP LL++DP +SFKSA WFWMT Q PKPSCH VII  W+PS++D  A R  GYG+  NII GG+ECGKGWN+ V  RIGF+  +C   G+  G+NLDCY Q P+G  +   SM
Sbjct:  110 FLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.873e-60
Identity = 106/188 (56.38%), Postives = 129/188 (68.62%), Query Frame = -1
Query:  200 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPG--QYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDCYTQGPYGPNLM 757
            FF QT HETTGGW  AP G Y+WGYC+ ++ +  SD        P     +YYGRGP+QL+WN NY  CG  +GVDLLNNP L+A D V++FK+AIWFWMTAQPPKPSCH VI  +W PS  D  A RLPGYG+  NII GG+ECG+G +  VA RIGF+  +C  FG+ PG NLDCY Q  +   L+
Sbjct:  144 FFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSFVNGLL 331          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.127e-59
Identity = 108/192 (56.25%), Postives = 133/192 (69.27%), Query Frame = -1
Query:  188 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHG-SDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDCYTQGPYGPNLMAQSM 757
            FFAQT HETTGGW  AP G YAWGYCY+R+  +  S           PGQ YYGRGPIQ+++N NY  CG  +G +LLNNP L+AT+ V+SFKSAIWFWMTAQ PKPSCH+VI   W PSA D  A+RLPGYG+  NII GG+ECG G ++ V  RIGF+  +C   G+ PGDN+DC  Q  +   L+ ++M
Sbjct:  143 FFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLVATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.377e-57
Identity = 99/180 (55.00%), Postives = 125/180 (69.44%), Query Frame = -1
Query:  224 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPG--QYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDCYTQ 757
            FF QT HETTGGW  AP G Y+WGYC+ ++ +  S+        P      YYGRGP+QL+WN NY +CG  +G DLLNNP L++ DPV++FK+AIWFWMT Q PKPSCH VI+ +W PS  D  A R+PGYG+  NII GG+ECG+G ++ VA RIGF+  +C   G+ PG NLDCY Q
Sbjct:  129 FFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQ 308          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.234e-57
Identity = 102/188 (54.26%), Postives = 127/188 (67.55%), Query Frame = -1
Query:  206 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLP----GQYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDCYTQGPYGPN 757
            F AQT HETTGGWP AP G Y+WGYC+ ++ ++G+           P     +YYGRGPIQ+T+N NY   G+ +G DLLNNP L+A+D  +SFK+A WFWMT Q PKPSCH VI  +W PSA+D  A R+PGYG   NII GG+ECG G +  VA RIGF+  +C   G+  GDNLDCY Q PY P+
Sbjct:  134 FLAQTSHETTGGWPTAPDGPYSWGYCF-KEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNYGPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPYPPS 320          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.989e-56
Identity = 103/187 (55.08%), Postives = 123/187 (65.78%), Query Frame = -1
Query:  203 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPG-QYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGW-NSFVATRIGFFPTFCGKFGIQPGDNLDCYTQGPYGPNL 757
            F  QT HETTGGWPDAP G YAWGYCY+++++             + G QY GRGPIQL+WN NY  CG+ L + LL  P L+ TDPV+SFK+AIWFWM  Q PKPSCH VI   W PSA D+ A R+PGYG+  NII GGIECG+G  N+    RIGF+  +C   G   G NLDCY Q P+G  L
Sbjct:  147 FLGQTSHETTGGWPDAPCGPYAWGYCYLKEINCQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.431e-56
Identity = 103/165 (62.42%), Postives = 121/165 (73.33%), Query Frame = -1
Query:  269 FFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXPLPGQ-YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCG 757
            FFAQT HETTGGWP AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG  +GVDLLNNP L+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W PSA D  A+RLPG+G+  NII GG+ECG+G +S V  RIGF+  +CG
Sbjct:  137 FFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
The following BLAST results are available for this feature:
BLAST of CF834033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_THECC7.803e-6156.99Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI3_SOLTU2.270e-6056.77Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU2.965e-6056.25Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_GOSHI2.965e-6057.22Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIB_ARATH3.873e-6056.38Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI3_TOBAC1.127e-5956.25Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_BRANA1.377e-5755.00Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHI3_ORYSJ5.234e-5754.26Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR1.989e-5655.08Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI4_SOLTU4.431e-5662.42Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04M14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834033 ID=CF834033; Name=CF834033; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTGGAGAAGACTCATTGCCTTTTTGGTTGGATCAG
GTCTTATTTAATTTACCTACAATAAGCAGCGTAACAAACTAACAATTTAG
TTGTCCACCTACAAGGGGGACATCTAAAGTTTTTATTAAGTAGCTTTTAT
TAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGGGCC
ATCAAATTAGGGCCATAAGGGCCTTGGGTGTAGCAATCAAGATTGTCGCC
AGGCTGAATCCCAAACTTGCCACAGAAAGTGGGAAAGAACCCAATACGGG
TAGCTACAAAGCTATTCCAACCTTTGCCACATTCAATTCCACCGGTGATT
ATATTTGGGGGTAGACCGTATCCCGGAAGCCGGCTGGCGTTTACGTCATT
TGCTGATGGGTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTG
GTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACT
GGATCAGTGGCAAGAAGGGCTGGATTGTTCAACAAGTCCACCCCCAAGGG
TTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTC
GGCCATAGTATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGTAG
TCGGACCCATGGCTAACTTGCCTAATATAGCAATATCCCCAAGCATATTC
TCCACCAGGGGCATCGGGCCATCCCCCAGTAGTTTCATGGCCAGTTTGGG
CAAAAAA
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