CF834033

Overview
NameCF834033
Unique NameCF834033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:380..1137. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = -1
Query:  233 YCYIRQVSHGSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 685
            +CYI +++  S           P      Y+GRGPIQL+WN NY  CG+ L ++LL  P L++++P ++F++ +WFWM                     N V      G+G     I  G+EC  G +  V  RI ++  +CG+ G+ PG NL C
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWM---------------------NSVRPVLNQGFGATIRAI-NGMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19
Identity = 53/179 (29.61%), Postives = 80/179 (44.69%), Query Frame = -1
Query:  233 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 757
            FFA   HET               +CYI ++   S           P      YYGRGP+Q++WN NY   G+ +G D L +P  +A  PVL+F++A+W+W        + H+  +                G+G     I G +EC     + V+ R+ ++  FC +FG+ PG NL C
Sbjct:  125 FFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.808e-18
Identity = 52/178 (29.21%), Postives = 80/178 (44.94%), Query Frame = -1
Query:  233 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 757
            FFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G  +G D L +P  +A D V++FK+A+WFWM                     N V+     G+G     +   +ECG    + +  R+G++  +C + G+ PG NL C
Sbjct:  126 FFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWM---------------------NSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17
Identity = 51/178 (28.65%), Postives = 80/178 (44.94%), Query Frame = -1
Query:  233 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 757
            FFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G  +G + L +P  +A D V++FK+A+WFWM                     N+V+     G+G     I G +EC     + +  R+G++  +C +  + PG NL C
Sbjct:  137 FFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.956e-15
Identity = 48/156 (30.77%), Postives = 71/156 (45.51%), Query Frame = -1
Query:  233 YCYIRQVSHGS-DXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 685
            +CYI ++   S D          P      Y+GRGPIQL+WN NY   G     D L  P  ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G     I G +EC     + V  R+ ++  +C + G+  GDNL C
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
The following BLAST results are available for this feature:
BLAST of CF834033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI4_BRANA3.317e-1932.26Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI6_ORYSJ5.658e-1929.61Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE2.808e-1829.21Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE4.054e-1728.65Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU4.956e-1530.77Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04M14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834033 ID=CF834033; Name=CF834033; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTGGAGAAGACTCATTGCCTTTTTGGTTGGATCAG
GTCTTATTTAATTTACCTACAATAAGCAGCGTAACAAACTAACAATTTAG
TTGTCCACCTACAAGGGGGACATCTAAAGTTTTTATTAAGTAGCTTTTAT
TAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAGATTGGGCC
ATCAAATTAGGGCCATAAGGGCCTTGGGTGTAGCAATCAAGATTGTCGCC
AGGCTGAATCCCAAACTTGCCACAGAAAGTGGGAAAGAACCCAATACGGG
TAGCTACAAAGCTATTCCAACCTTTGCCACATTCAATTCCACCGGTGATT
ATATTTGGGGGTAGACCGTATCCCGGAAGCCGGCTGGCGTTTACGTCATT
TGCTGATGGGTTCCATTCGTCGATAATGACTTCGTGGCACGATGGCTTTG
GTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATGATAGTACT
GGATCAGTGGCAAGAAGGGCTGGATTGTTCAACAAGTCCACCCCCAAGGG
TTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAATTGGACCTC
GGCCATAGTATTGCCCTGGCAAGGGACATGGACAGTAAGGATAACAGTAG
TCGGACCCATGGCTAACTTGCCTAATATAGCAATATCCCCAAGCATATTC
TCCACCAGGGGCATCGGGCCATCCCCCAGTAGTTTCATGGCCAGTTTGGG
CAAAAAA
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