CF834033
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19 Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = -1 Query: 233 YCYIRQVSHGSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 685 +CYI +++ S P Y+GRGPIQL+WN NY CG+ L ++LL P L++++P ++F++ +WFWM N V G+G I G+EC G + V RI ++ +CG+ G+ PG NL C Sbjct: 136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELVSSNPTVAFRTGLWFWM---------------------NSVRPVLNQGFGATIRAI-NGMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.658e-19 Identity = 53/179 (29.61%), Postives = 80/179 (44.69%), Query Frame = -1 Query: 233 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 757 FFA HET +CYI ++ S P YYGRGP+Q++WN NY G+ +G D L +P +A PVL+F++A+W+W + H+ + G+G I G +EC + V+ R+ ++ FC +FG+ PG NL C Sbjct: 125 FFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.808e-18 Identity = 52/178 (29.21%), Postives = 80/178 (44.94%), Query Frame = -1 Query: 233 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 757 FFA HET +CYI +++ + D +YYGRGP+Q++WN NY G +G D L +P +A D V++FK+A+WFWM N V+ G+G + +ECG + + R+G++ +C + G+ PG NL C Sbjct: 126 FFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWM---------------------NSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.054e-17 Identity = 51/178 (28.65%), Postives = 80/178 (44.94%), Query Frame = -1 Query: 233 FFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 757 FFA HET +CYI +++ + D +YYGRGP+Q++WN NY G +G + L +P +A D V++FK+A+WFWM N+V+ G+G I G +EC + + R+G++ +C + + PG NL C Sbjct: 137 FFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280
BLAST of CF834033 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.956e-15 Identity = 48/156 (30.77%), Postives = 71/156 (45.51%), Query Frame = -1 Query: 233 YCYIRQVSHGS-DXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEPLGVDLLNNPALLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWNPSANDVNASRLPGYGLPPNIITGGIECGKGWNSFVATRIGFFPTFCGKFGIQPGDNLDC 685 +CYI ++ S D P Y+GRGPIQL+WN NY G D L P ++ D V+SFK+A+W+WM Q +P ++ G+G I G +EC + V R+ ++ +C + G+ GDNL C Sbjct: 136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270 The following BLAST results are available for this feature:
BLAST of CF834033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834033 ID=CF834033; Name=CF834033; organism=Citrus sinensis; type=EST; length=757bpback to top |