CF834069

Overview
NameCF834069
Unique NameCF834069
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS1_RUTGR (Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.640e-66
Identity = 118/191 (61.78%), Postives = 149/191 (78.01%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G A +LAIGTA P N + QADYPDYYFR T S+H+T L++KFKR+C+KS ++KRY H+T+ IL++NPN+CAY   SLD+RQ I+V EVPKLG+EAA KAIKEWGQ KS+ITHLIFC+  G+ MP  DY LTK+L L PSVKR M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGP+D H
Sbjct:   17 GPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYMHLTEDILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGCDYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPADTH 207          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS1_CITSI (Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 9.640e-66
Identity = 117/191 (61.26%), Postives = 153/191 (80.10%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G ATI+AIGTA PPNC+ Q+ YPDYYFR TNS+H+T L++KFKR+C+KS +KKRY ++T+ IL++NPN+CAY   SLD+RQ ++V EVP+LG +AA +AIKEWGQ KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPSD H
Sbjct:   15 GPATIMAIGTATPPNCVDQSTYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYMYLTEEILKENPNVCAYMAPSLDTRQDMVVVEVPRLG-KAATEAIKEWGQPKSKITHLVFCTTSGVDMPGADYRLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTH 204          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSY_ARATH (Chalcone synthase OS=Arabidopsis thaliana GN=CHS PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.259e-65
Identity = 117/191 (61.26%), Postives = 152/191 (79.58%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G A ILAIGTANP N + QA+YPDYYFR TNS+H+T L++KFKR+C+KS ++KR+ H+T+  L++NP++CAY   SLD+RQ I+V EVPKLG+EAA KAIKEWGQ KS+ITH++FC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPSD H
Sbjct:   20 GPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSTIRKRHMHLTEEFLKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAKDLAENNRGARVLVVCSEITAVTFRGPSDTH 210          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSD_IPONI (Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.259e-65
Identity = 117/191 (61.26%), Postives = 151/191 (79.06%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G ATILAIGTA P NC+ Q+ YPDYYFR TNSDH+T L+QKF+R+C+KS + KRY H+T+ IL++NP+ C Y   SLD+RQ I+V EVPKLG+EAA+ AIKEWGQ KS+ITH+IFC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS++++ TFRGP++ H
Sbjct:   15 GPATILAIGTATPANCVDQSTYPDYYFRITNSDHMTDLKQKFQRMCDKSMITKRYMHLTEEILKENPSFCEYMAPSLDARQDIVVVEVPKLGKEAAQSAIKEWGQPKSKITHVIFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRVAKDLAENNKAARVLVVCSEITVVTFRGPNETH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS7_SOYBN (Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.644e-65
Identity = 119/191 (62.30%), Postives = 149/191 (78.01%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G ATILAIGTANPPN + Q+ YPDYYFR TNSDH+T L++KF+R+C+KS +K RY ++ + IL++NPN+CAY   SLD+RQ ++V EVPKLG+EAA KAIKEWGQ KS+ITHLIFC+  G+ MP ADY LTK L L P VKR M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPSD H
Sbjct:   15 GPATILAIGTANPPNRVDQSTYPDYYFRITNSDHMTELKEKFQRMCDKSMIKTRYMYLNEEILKENPNMCAYMAPSLDARQDMVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKQLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSY_HYDMC (Chalcone synthase OS=Hydrangea macrophylla GN=CHS PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 2.805e-65
Identity = 116/191 (60.73%), Postives = 149/191 (78.01%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G ATILAIGTA PPN + Q+ YPD+YFR TNS+H   L+ KF+R+C+ S +KKRY H+T+ IL++NPNICAY   SLD+RQ ++V E+PKLG+EAA +AIKEWGQ KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPSD H
Sbjct:   15 GPATILAIGTATPPNYVDQSTYPDFYFRVTNSEHKKELKAKFQRMCDNSQIKKRYMHLTEEILKENPNICAYMAPSLDARQDMVVVEIPKLGKEAATRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS1_SOLLC (Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS1 PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 3.663e-65
Identity = 114/191 (59.69%), Postives = 149/191 (78.01%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G ATILAIGT+ P NC+ Q+ YPDYYFR TNS+H T L++KFKR+C+KS +KKRY H+T+ IL++NPN+CAY   SLD+RQ I+V EVPKLG+   +KAIKEWGQ KS+ITHL+FC+  G+ MP  DY L K+L + PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPS++H
Sbjct:   15 GPATILAIGTSTPSNCVDQSTYPDYYFRITNSEHKTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKRGTQKAIKEWGQPKSKITHLVFCTTSGVDMPACDYQLAKLLPVRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSESH 205          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.784e-65
Identity = 116/191 (60.73%), Postives = 151/191 (79.06%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G A IL IGTANP N + QA+YPDYYFR TNS+H+T L++KF+R+C+KS ++KR+ H+T+  L++NPN+CAY   SLD+RQ I+V EVPKLG+EAA +AIKEWGQ KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGPSD H
Sbjct:   19 GPAGILGIGTANPANHVIQAEYPDYYFRITNSEHMTDLKEKFQRMCDKSMIRKRHMHLTEDFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVRAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPSDTH 209          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS3_GERHY (Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.784e-65
Identity = 113/191 (59.16%), Postives = 150/191 (78.53%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G ATILAIGTA P NC+YQADYPDYYFR T S+H+  L++KF+R+C+KS ++KRY H+T+  L++NP++C +   SLD+RQ ++V EVPKLG+EAA KAIKEWG  KS+ITHL+FC+  G+ MP ADY LTK+L L PSVKR+M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGP++ H
Sbjct:   21 GPATILAIGTATPANCVYQADYPDYYFRVTESEHMVDLKEKFQRMCDKSMIRKRYMHITEEFLKENPSMCKFMAPSLDARQDLVVVEVPKLGKEAATKAIKEWGFPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNEGH 211          
BLAST of CF834069 vs. ExPASy Swiss-Prot
Match: CHS2_RUTGR (Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.784e-65
Identity = 117/191 (61.26%), Postives = 149/191 (78.01%), Query Frame = 1
Query:   52 GLATILAIGTANPPNCLYQADYPDYYFRDTNSDHVTLLEQKFKRICEKSNVKKRYFHVTQYILRKNPNICAYDGSSLDSRQYILVREVPKLGEEAAKKAIKEWGQSKSQITHLIFCSLVGIYMPRADYLLTKMLRLNPSVKRVMLYFQGCYIVATAIRMGKDFAENNPDTRVLYICSDLSLGTFRGPSDAH 624
            G A +LAIGTA P N + QADYPDYYFR T S+H+T L++KFKR+C+KS ++KRY ++T+ IL++NPN+CAY   SLD+RQ I+V EVPKLG+EAA KAIKEWGQ KS+ITHLIFC+  G+ MP  DY LTK+L L PSVKR M+Y QGC+   T +R+ KD AENN   RVL +CS+++  TFRGP+D H
Sbjct:   17 GPAAVLAIGTATPANYVTQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIRKRYMYLTEDILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGCDYQLTKLLGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAENNRGARVLVVCSEITAVTFRGPADTH 207          
The following BLAST results are available for this feature:
BLAST of CF834069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
CHS1_RUTGR9.640e-6661.78Chalcone synthase 1 OS=Ruta graveolens GN=CHS1 PE=... [more]
CHS1_CITSI9.640e-6661.26Chalcone synthase 1 OS=Citrus sinensis GN=CHS1 PE=... [more]
CHSY_ARATH1.259e-6561.26Chalcone synthase OS=Arabidopsis thaliana GN=CHS P... [more]
CHSD_IPONI1.259e-6561.26Chalcone synthase D OS=Ipomoea nil GN=CHSD PE=2 SV... [more]
CHS7_SOYBN1.644e-6562.30Chalcone synthase 7 OS=Glycine max GN=CHS7 PE=3 SV... [more]
CHSY_HYDMC2.805e-6560.73Chalcone synthase OS=Hydrangea macrophylla GN=CHS ... [more]
CHS1_SOLLC3.663e-6559.69Chalcone synthase 1 OS=Solanum lycopersicum GN=CHS... [more]
CHSY_MATIN4.784e-6560.73Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHS3_GERHY4.784e-6559.16Chalcone synthase 3 OS=Gerbera hybrida GN=CHS3 PE=... [more]
CHS2_RUTGR4.784e-6561.26Chalcone synthase 2 OS=Ruta graveolens GN=CHS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N17_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834069 ID=CF834069; Name=CF834069; organism=Citrus sinensis; type=EST; length=625bp
TAATATATAATGGAGAAAGATAAAGATGGGAAGAACCAACTGCAAGGAGG
AGGGTTAGCCACGATCCTAGCCATCGGAACTGCAAATCCACCTAACTGCT
TATACCAAGCTGACTACCCTGATTATTACTTCCGTGACACCAACAGTGAC
CACGTGACTCTCCTCGAACAAAAATTCAAACGCATCTGCGAGAAATCAAA
TGTAAAGAAACGCTACTTCCATGTTACCCAATATATTCTCAGAAAGAACC
CGAATATATGTGCCTACGACGGCTCCTCCCTCGATAGCCGTCAATATATA
TTGGTTAGGGAAGTACCGAAACTTGGCGAGGAAGCGGCAAAAAAAGCAAT
CAAAGAATGGGGCCAATCAAAATCCCAGATCACGCATCTCATTTTCTGCT
CACTTGTGGGCATATACATGCCCAGGGCTGACTATCTGCTGACCAAAATG
TTGCGCCTCAACCCATCTGTCAAACGAGTCATGCTATACTTTCAAGGCTG
TTACATTGTCGCCACAGCCATCCGAATGGGCAAGGACTTTGCTGAAAACA
ACCCTGATACCCGCGTTCTATACATATGCTCTGACTTATCCCTTGGTACT
TTCCGTGGACCTTCTGATGCCCACT
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