CF834074

Overview
NameCF834074
Unique NameCF834074
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = -1
Query:  342 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYARELR 638
            GL+V  DG+W PV+P+P A ++NIGDT   ++NG Y+S  HRAVVN  +ER S+A     R D  V P  S  + +  P F    +  + +  Y  + R
Sbjct:  265 GLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDFTWADLMRFTQRHYRADTR 363          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.778e-13
Identity = 36/89 (40.45%), Postives = 53/89 (59.55%), Query Frame = -1
Query:  372 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEY 638
            GLQV KDG W     +P+A IV+IGD +EI++NG Y+S+ HR  VN  + R+S         D EV P   L++E+ P  F+  + ++Y
Sbjct:  236 GLQVYKDGHWYDCKYIPNALIVHIGDQVEIMSNGKYKSVYHRTTVNKEKTRMSWPVFLEPPPDHEVGPIPKLVNEENPAKFKTKKYKDY 324          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 42/117 (35.90%), Postives = 60/117 (51.28%), Query Frame = -1
Query:  297 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTP---PLFRRVRIEEYFRSRYARELRGKSQLDSLRIQHGQG 638
            GLQV  +G+W  + P  DAF+VNIGDT   ++NG Y+S  HRAVVNS   R S+A       D  V P  +L+    P   P F    + ++ +  Y  +++      S  +Q  QG
Sbjct:  240 GLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWIVQQQQG 356          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 42/117 (35.90%), Postives = 60/117 (51.28%), Query Frame = -1
Query:  297 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTP---PLFRRVRIEEYFRSRYARELRGKSQLDSLRIQHGQG 638
            GLQV  +G+W  + P  DAF+VNIGDT   ++NG Y+S  HRAVVNS   R S+A       D  V P  +L+    P   P F    + ++ +  Y  +++      S  +Q  QG
Sbjct:  240 GLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDASNPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWIVQQQQG 356          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: ACCO_MUSAC (1-aminocyclopropane-1-carboxylate oxidase OS=Musa acuminata GN=MAO1B PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.327e-12
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = -1
Query:  402 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPP 638
            GLQ+ KDG+WI V PL DA ++N GD +E+++NG Y+S  HR +  S   R S+A+ Y+      + PA+   +E+  P
Sbjct:  194 GLQMLKDGRWIDVQPLADAIVINTGDQIEVLSNGRYKSAWHRVLATSHGNRRSIASFYNPSLKATIAPAAGAATEEAAP 272          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.263e-12
Identity = 37/111 (33.33%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  309 GLQVKKD-GKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRIQ 638
            GLQ+    G WIPV P P  F V +GD L+++TNG + S+ HR + N+ + R+S+    +   +  + P S +++  +P L+R     +Y ++ YA  L G ++LD  ++Q
Sbjct:  225 GLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFTWAQYKQAAYALRL-GDTRLDQFKVQ 334          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.585e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = -1
Query:  372 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEY 638
            GLQV KD +WI    +P+A +++IGD +EI++NG Y+++ HR  VN  + R+S         D  V P   L+ ++ PP ++  + ++Y
Sbjct:  237 GLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 325          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = -1
Query:  300 GLQVKKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTP---PLFRRVRIEEYFRSRYARELRGKSQLDSLRIQHGQ 638
            GLQV  +G+W  + P  DAF+VNIGDT   ++NG Y+S  HRAVVNS   R S+A       D  V P  +L+    P   P F    + ++ +  Y  +++      S  +Q  Q
Sbjct:  240 GLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRVPRKSLAFFLCPEMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHYRADMKTLEVFSSWIVQQQQ 355          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.123e-11
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = -1
Query:  345 EGLQV-KKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVYSVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYAREL 641
            EGLQ+  KDG W+ VTP   +F V +GDTL+++TNG ++S++HR V N+ + R+S+          ++ P S L+ ++   L+      +Y  S Y  +L
Sbjct:  217 EGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLSAYKTKL 316          
BLAST of CF834074 vs. ExPASy Swiss-Prot
Match: G3OX4_ARATH (Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.502e-11
Identity = 39/111 (35.14%), Postives = 65/111 (58.56%), Query Frame = -1
Query:  312 GLQV-KKDGKWIPVTPLPDAFIVNIGDTLEIITNGTYRSIEHRAVVNSVQERLSVATVY-SVRYDGEVYPASSLISEKTPPLFRRVRIEEYFRSRYARELRGKSQLDSLRI 638
            GLQV +++  W+ V P P   +VNIGD   I++NG   S+ HRA VN  + R+S+A ++     D ++ P S L     P L+R +  +EY + +Y  E+  K+ +D++R+
Sbjct:  243 GLQVFREESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHTRSRISIAYLWGGPAGDVQIAPISKLTGPAEPSLYRSITWKEYLQIKY--EVFDKA-MDAIRV 350          
The following BLAST results are available for this feature:
BLAST of CF834074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
GAOX2_ORYSI7.778e-1339.39Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
FLS_EUSGR7.778e-1340.45Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
GAO1B_WHEAT1.327e-1235.90Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT1.327e-1235.90Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
ACCO_MUSAC1.327e-1240.511-aminocyclopropane-1-carboxylate oxidase OS=Musa ... [more]
G2OX2_PEA2.263e-1233.33Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
FLS_CITUN6.585e-1234.83Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
GAO1D_WHEAT8.600e-1235.34Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
G2OX3_ARATH1.123e-1135.00Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G3OX4_ARATH2.502e-1135.14Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834074 ID=CF834074; Name=CF834074; organism=Citrus sinensis; type=EST; length=647bp
TTTTTTTTTTTTTTTTTGCAAAATTCTATTTCAAAAAAGAAAGATACTGA
TCTGATATAAGCACCACCATATATCATCGGAAGATTCCAGGCATAAGTCT
GCAATTCTTAAGATTCTTACATGTTCTATTCAGTATCTCAAATGATAGAG
CTACACAACGATCCCAGCATGGCAGGTTATACCACAGTATTCATAGAACT
TATTTCTTATTTTCAGTTCCACACACAATCTCAATAGCAAGGTCCTTCAG
AGTTTTTGTACCAAACTCTTTAGTTATCCGAAATAAACTTATACTAGCCT
TGACCATGTTGAATTCTCAGGGAATCCAGCTGAGATTTTCCCCTAAGCTC
ACGAGCATACCGGCTCCTAAAGTATTCTTCAATTCTCACTCTTCTAAACA
AAGGAGGAGTTTTTTCAGAGATCAAACTGGAGGCAGGATATACTTCACCA
TCATATCTCACTGAGTAAACTGTGGCAACGGAAAGTCTTTCCTGTACAGA
GTTTACAACTGCACGATGCTCAATGCTGCGGTATGTCCCATTGGTTATAA
TCTCCAATGTGTCTCCAATGTTGACAATGAAAGCATCCGGGAGTGGGGTA
ACAGGAATCCACTTTCCATCCTTCTTTACCTGGAGACCCTCCCACTT
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