CF834075

Overview
NameCF834075
Unique NameCF834075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2617 contig Csv1_Contig2617:78..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.102e-23
Identity = 72/250 (28.80%), Postives = 115/250 (46.00%), Query Frame = 1
Query:   28 VQELAKNPALVVPDRYIRPDQDSPLISDDTLISQIPVIDMQSLHSEESMDSELA-KLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQA---FVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLP 765
            V+ L  +    VP  ++ P +D     +   +   PVID+Q +  +     E+  K+    ++WGFFQ+VNHG+ T+ L++  +    FF    E KK+Y+ R    +    +      S      W D       P     P    + P    E+L  +S ++K L   L+  + E L +    ++++ +        NYYPPCPQPE  MG   H+D   +TILLQ +++ GLQV     W+ V P P
Sbjct:   26 VKGLVDSGITKVPQIFVLPPKDRAKKCETHFV--FPVIDLQGIDEDPIKHKEIVDKVRDASEKWGFFQVVNHGIPTSVLDRTLQGTRQFFEQDNEVKKQYYTRDTAKKVVYTSNLDLYKSSVPAASWRDTIFCYMAP----NPPSLQEFPTPCGESLIDFSKDVKKLGFTLLELLSEGLGLDRSYLKDYMDCFHLFCSCNYYPPCPQPELTMGTIQHTDIGFVTILLQ-DDMGGLQVLHQNHWVDVPPTP 268          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.664e-23
Identity = 65/216 (30.09%), Postives = 113/216 (52.31%), Query Frame = 1
Query:  133 PVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEK-KKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQGM-----RMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPL 762
            PVI+M+ L   +   + +A L   C+ WGFF+L+NHG+S   + +++   +  +    E++ K++  +  D      +    +   LDW   F +  LP         P L    R T++ ++ EL+ LAE L+  + E L ++   ++  F  G  G+     +++ YPPCP+P+ + GL  H+DA  + +L Q ++V GLQ+ KD +WI V PL
Sbjct:    7 PVINMELLQGSQR-PAAMALLRDACENWGFFELLNHGISHELMNRVEAVNKEHYRRFREQRFKEFASKTLD------SVENVDPDNLDWESTFFLRHLPTS--NISQIPDLDDDCRATMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPL 213          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.703e-23
Identity = 70/242 (28.93%), Postives = 121/242 (50.00%), Query Frame = 1
Query:   61 VPDRYIRPDQDSPLISDDTLISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVH-LRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENG-LQG----MRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQV-KKDGKWIPVTPLP 765
            +PD Y    +D  L S       +P+ID+  +H           +   C  WG FQ+ NHG+ +  L+ ++      F L ++ K K  +    + G+G A + S   K  W++ F+++  P+H  RK  L+P       E +E Y   ++ LA  L+      L +++++++    N   QG    +++N+YP CP+P++ MGL+ H+D+  +TIL Q N   GLQV + D  W+   P+P
Sbjct:   27 LPDSYTWTPKDDLLFSASASDETLPLIDLSDIHVA-------TLVGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENGVSGYGVARIASFFNKKMWSEGFTVIGSPLHDFRK--LWPSHHLKYCEIIEEYEEHMQKLAAKLMWFALGSLGVEEKDIQWAGPNSDFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMTILYQ-NNTAGLQVFRDDVGWVTAPPVP 258          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.532e-22
Identity = 72/247 (29.15%), Postives = 125/247 (50.61%), Query Frame = 1
Query:   79 RPDQDSPLISDDTLISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKY--------WQRPGDMEG--FGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQGMRM---NYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQ--VKKDGKWIPVTPLPDAF 774
            R ++D P+ +D      +P+ID+Q  H    +  ++ K    C+++G FQ++NHG     + +  +  + FF L  EEK+K+        ++ P + +   + +   +S E+ L W D  +    P+     + +P+ P   RE +  YS+E++ L   ++  + E L +K      +F+N L  ++M   NYYPPCP P   +G   H D   +T+L Q  ++ GLQ  + KD  WI V P+P AF
Sbjct:   24 RAEKDVPVGND------VPIIDLQQHH--HLLVQQITK---ACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLK----LGYFDNELSQIQMMLTNYYPPCPDPSSTLGSGGHYDGNLITLLQQ--DLPGLQQLIVKDATWIAVQPIPTAF 253          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.307e-22
Identity = 60/217 (27.65%), Postives = 113/217 (52.07%), Query Frame = 1
Query:  121 ISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFF---ENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPL 762
            +   PVI+M+ ++ EE   + +  ++  C+ WGFF+LVNHG+    ++ +++  +  +   ME++ K       +EG     + +E   +DW   + +  LP         P L    R  ++ ++  L+ LAE L+  + E L ++   +++ F   +    G ++  YPPCP+ + + GL  H+DA  + +L Q ++V GLQ+ KD +WI V P+
Sbjct:    1 MESFPVINMEKMNGEERA-ATMGLINDACENWGFFELVNHGIPPELMDTVERVTKAHYKKCMEQRFKELVASKALEG-----IQAEVTDMDWESTYFLRHLPQSNISE--VPDLDEEYRRVMKDFAERLEKLAEYLLDLLCENLGLEKGYLKKAFYGTKGPNFGTKVANYPPCPKADLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDDQWIDVPPM 209          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.776e-21
Identity = 78/275 (28.36%), Postives = 131/275 (47.64%), Query Frame = 1
Query:   19 VPCVQELAKNP-------ALVVPDRYIRPD-QDSPLISDDTLISQ---IPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWAD--LFSMMTLPVHLRKPHLFPKLPPSLRE---TLEVYSMELKTLAENLISKMGEVLNIKDEEM------REFFENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDG--KWIPVTPLPDA 771
            +P    L+K+P       A  VP+ +  P   D P++       +   +PV+DM+   + E++           ++WG F LV HG+    L +++  + G F L   EK +  +RPGD  G+G   + S   K  W++   FS   L   LRK  L+PK     R     +E +  E++ LA+ L+      L +  E++      ++  E     M +N+YP CP P++ +GL  H+D+   T +LQ + V GLQ+ + G  +W+ V  +P A
Sbjct:    1 MPTPAHLSKDPHYFDFRAARRVPETHAWPGLHDHPVVDGSGAGGEPDAVPVVDMRDPFAAEAVG-------LAAQDWGAFLLVGHGVPLDLLVRVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRK--LWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGA 265          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.043e-20
Identity = 77/256 (30.08%), Postives = 122/256 (47.66%), Query Frame = 1
Query:   28 VQELAKNPALVVPDRYIRP-DQDSPLISDDTLISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEG---FGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQGMRM----NYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDA 771
            V  L    A  +PD ++ P D+  P  +D +L    P+IDM     E       A LD   KE+GF Q+VNHG+S   L ++      FF++  E+K +++            G AF    E+   W D+  ++  P+       +P  P  LRE +  Y+   + +A  ++  + E L ++ +    FF   + G R+    NYYPP P P + +GL PH D   +T+LL    V GL++   G WI V P+P++
Sbjct:    4 VMNLTPVHASSIPDSFLLPADRLHPATTDVSL----PIIDMSRGRDEVRQ----AILDSG-KEYGFIQVVNHGISEPMLHEMYAVCHEFFDMPAEDKAEFFSEDRSERNKLFCGSAFETLGEKY--WIDVLELL-YPLPSGDTKDWPHKPQMLREVVGNYTSLARGVAMEILRLLCEGLGLRPD----FFVGDISGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLP-GAVPGLEIAYKGGWIKVQPVPNS 242          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.280e-20
Identity = 77/275 (28.00%), Postives = 129/275 (46.91%), Query Frame = 1
Query:   19 VPCVQELAKNP-------ALVVPDRYIRPD-QDSPLISDDTL---ISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWAD--LFSMMTLPVHLRKPHLFPKLPPSLRE---TLEVYSMELKTLAENLISKMGEVLNIKDEEM------REFFENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDG--KWIPVTPLPDA 771
            +P    L+K+P       A  VP+ +  P   D P++           +PV+DM+   + E++           ++WG F L  HG+    L +++  + G F L   EK +  +RPGD  G+G   + S   K  W++   FS   L   LRK  L+PK     R     +E +  E++ LA+ L+      L +  E++      ++  E     M +N+YP CP P++ +GL  H+D+   T +LQ + V GLQ+ + G  +W+ V  +P A
Sbjct:    1 MPTPAHLSKDPRYFDFRAARRVPETHAWPGLHDHPVVDGSGAGGGPDAVPVVDMRDPCAAEAVA-------LAAQDWGAFLLEGHGVPLELLARVEAAIAGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKCMWSEGYTFSPANLRSDLRK--LWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQ-SLVPGLQLFRHGPDRWVTVPAVPGA 265          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: LDOX_MAIZE (Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.896e-20
Identity = 64/268 (23.88%), Postives = 119/268 (44.40%), Query Frame = 1
Query:   28 VQELAKNPALVVPDRYIRPDQDSPLISD----------DTLISQIPVID----MQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRP--GDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLIS--KMGEVLNIKDEEMREFF----------ENGLQGMRMNYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWI 747
            V+ L+ +    +P  Y+RP  +   + D          D    +IPV+D    + S   ++  D  +  +     +WG   +  HG+    +++L+     FF L +++K+ Y   P  G ++G+G     +   + +W D    +  P  L    L+P  PP        +    + LA  L++   MG +   + + + +            ++ L  +++NYYP CPQPE  +G+  H+D +AL+ +L  N V GLQV    +W+
Sbjct:   14 VEALSLSGLSAIPPEYVRPADERAGLGDAFDLARTHANDHTAPRIPVVDISPFLDSSSQQQQRDECVEAVRAAAADWGVMHIAGHGIPAELMDRLRAAGTAFFALPVQDKEAYANDPAAGRLQGYGSRLATNTCGQREWEDYLFHLVHPDGLADHALWPAYPPDYIAATRDFGRRTRDLASTLLAILSMGLLGTDRGDALEKALTTTTTRTAADDDLLLQLKINYYPRCPQPELAVGVEAHTDVSALSFILH-NGVPGLQVLHGARWV 280          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.896e-20
Identity = 68/224 (30.36%), Postives = 114/224 (50.89%), Query Frame = 1
Query:  127 QIPVIDMQSLHSEESMDSELA-KLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKL------DWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQGMRM--NYYPPCPQPEKVMGLSPHSDAAALTILLQLNEVEGLQVKKDGKWIPVTPLPDA 771
            +IPVI++  L S   +  E+  K+    +++GFFQ+VNHG+    ++K+   V  F     + K++Y+ R    + F + F+ S    L      +W D    + +  +   P  FP +    R+ L  YS  ++ L   L   + E L +K   + E   +  +G+ +  +YYP CPQPE   G S HSD+  LTIL+Q +++ GLQ+  + +WI V  +P A
Sbjct:   90 KIPVINLNGLSSNSEIRREIVEKIGEASEKYGFFQIVNHGIPQDVMDKMVDGVRKFHEQDDQIKRQYYSR----DRFNKNFLYSSNYVLIPGIACNWRDTMECI-MNSNQPDPQEFPDV---CRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEM--DCAEGLILLGHYYPACPQPELTFGTSKHSDSGFLTILMQ-DQIGGLQILLENQWIDVPFIPGA 302          
The following BLAST results are available for this feature:
BLAST of CF834075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ACCH3_SOLLC5.102e-2328.801-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
ACCO2_DORSP6.664e-2330.091-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
G3OX2_ARATH8.703e-2328.93Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
HY6H_HYONI2.532e-2229.15Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
ACCO_DIOKA3.307e-2227.651-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
G3O23_WHEAT4.776e-2128.36Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
IDS2_HORVU4.043e-2030.08Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
G3O22_WHEAT5.280e-2028.00Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
LDOX_MAIZE6.896e-2023.88Leucoanthocyanidin dioxygenase OS=Zea mays GN=A2 P... [more]
DV4H_CATRO6.896e-2030.36Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834075 ID=CF834075; Name=CF834075; organism=Citrus sinensis; type=EST; length=774bp
CGGGGAAGTTCTCTCCTTGTGCCTTGTGTTCAAGAGTTGGCCAAGAATCC
GGCGTTAGTTGTCCCCGACAGATACATACGTCCAGATCAAGATTCACCCC
TCATTTCTGATGATACTTTGATTTCACAGATACCAGTTATTGACATGCAA
AGCTTACATTCTGAAGAATCAATGGATTCTGAGTTAGCCAAGCTCGACTT
CGTATGCAAAGAATGGGGTTTTTTCCAGCTGGTAAATCATGGAATGAGCA
CAGCATTTCTAGAGAAATTAAAGAAAGAGGTTGAGGGATTCTTCAATCTC
AGCATGGAAGAAAAGAAAAAATATTGGCAGCGTCCAGGAGATATGGAAGG
ATTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAAGCTTGATTGGGCTG
ACCTTTTCTCCATGATGACTCTTCCAGTTCATCTGAGGAAACCACATTTA
TTTCCTAAGCTCCCTCCTTCCCTCAGAGAGACCTTGGAAGTTTACTCAAT
GGAATTAAAAACCCTAGCCGAGAACCTAATATCGAAAATGGGAGAAGTGT
TAAATATCAAAGATGAAGAAATGAGAGAATTCTTTGAAAATGGACTGCAA
GGAATGAGGATGAATTATTACCCTCCATGTCCTCAGCCCGAGAAGGTTAT
GGGCCTGTCGCCGCATTCTGATGCGGCTGCACTTACCATTCTGCTACAAC
TTAATGAAGTGGAGGGTCTCCAGGTAAAGAAGGATGGAAAGTGGATTCCT
GTTACCCCACTCCCGGATGCTTTC
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