CF834075

Overview
NameCF834075
Unique NameCF834075
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2617 contig Csv1_Contig2617:78..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.916e-15
Identity = 62/243 (25.51%), Postives = 110/243 (45.27%), Query Frame = 1
Query:   76 IRPDQDSPLISDDTLISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLP--VHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFF---ENGLQGMRMNYYPPCPQPE----KVMGLSPHSDAAALTILLQLNEVEGLQV-KKDGKWIPVTPLPDAF 774
            ++P + +PL +       IPV+D+    ++  + +        C+++GFF+LVNHG+    +  L+ E   FF  S  EK +    P D  G+G    +     + W +   + T P  +  +   +F + P   R  +E Y   +K +   ++  M E L I+           E      R+N+YPPCP+ +     ++G   H+D   +++ L+ N   GLQ+   DG W+ V P   +F
Sbjct:   15 LKPFKSTPLFTG------IPVVDLTHPDAKNLIVN-------ACRDFGFFKLVNHGVPLELMANLENEALRFFKKSQSEKDR--AGPPDPFGYGSK-RIGPNGDVGWVEYLLLNTNPDVISPKSLCIFRENPHHFRAVVENYITAVKNMCYAVLELMAEGLGIRQRNTLSRLLKDEKSDSCFRLNHYPPCPEVQALNRNLVGFGEHTDPQIISV-LRSNSTSGLQICLTDGTWVSVPPDQTSF 240          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.724e-15
Identity = 61/228 (26.75%), Postives = 109/228 (47.81%), Query Frame = 1
Query:  130 IPVIDMQSLHSEESMDSEL-AKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPH---LFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEE-----MREFFENGLQGMRMNYYPPCPQPEKVM---GLSPHSDAAALTILLQLNEVEGLQV-KKDGKWIPVTPLPDAF 774
            +PV+   S+      D E   ++   C+E+GFF++VNHG+    + +L++E  GFF L    K +    P +  G+G    +     + W +   +   P  L  P    +F + P   RE++E Y  E+K ++  ++  + E L I+  +     +R+  E     +R+N+YP   +  + M   G   H+D   +++ L+ N   GLQ+  KDG W+ V P   +F
Sbjct:   23 VPVLTSHSIPVVNLADPEAKTRIVKACEEFGFFKVVNHGVRPELMTRLEQEAIGFFGLPQSLKNR--AGPPEPYGYGNK-RIGPNGDVGWIEYLLLNANP-QLSSPKTSAVFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRD--EKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISV-LRSNNTAGLQICVKDGSWVAVPPDHSSF 243          
BLAST of CF834075 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.645e-13
Identity = 60/228 (26.32%), Postives = 107/228 (46.93%), Query Frame = 1
Query:  115 TLISQIPVIDMQSLHSEESMDSELAKLDFVCKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMREFFENGLQG---MRMNYYPPCPQ----PEKVMGLSPHSDAAALTILLQLNEVEGLQVK-KDGKWIPVTPLPDAF 774
            T  S IP++D+    S+    + + K    C+++GFF+++NHG+    + +L+ E   FF+L   EK+K    P +  G+G    +     + W +   + T   H     L+ +     R  L+ Y   ++ +A  ++  M E L I+ + +        Q     R+N+YP CP+     E ++G   H+D   ++I L+ N   G Q+  +DG WI V P   +F
Sbjct:   22 TFSSSIPLVDL----SKPDAKTLIVK---ACEDFGFFKVINHGIPLDAISQLESEAFKFFSLPQTEKEK--AGPANPFGYGNK-RIGLNGDIGWIEYLLLTTNQDH--NFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISI-LRSNNTSGFQISLRDGSWISVPPDHSSF 236          
The following BLAST results are available for this feature:
BLAST of CF834075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
G2OX_PHACN3.916e-1525.51Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX2_ARATH8.724e-1526.75Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX1_PEA1.645e-1326.32Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834075 ID=CF834075; Name=CF834075; organism=Citrus sinensis; type=EST; length=774bp
CGGGGAAGTTCTCTCCTTGTGCCTTGTGTTCAAGAGTTGGCCAAGAATCC
GGCGTTAGTTGTCCCCGACAGATACATACGTCCAGATCAAGATTCACCCC
TCATTTCTGATGATACTTTGATTTCACAGATACCAGTTATTGACATGCAA
AGCTTACATTCTGAAGAATCAATGGATTCTGAGTTAGCCAAGCTCGACTT
CGTATGCAAAGAATGGGGTTTTTTCCAGCTGGTAAATCATGGAATGAGCA
CAGCATTTCTAGAGAAATTAAAGAAAGAGGTTGAGGGATTCTTCAATCTC
AGCATGGAAGAAAAGAAAAAATATTGGCAGCGTCCAGGAGATATGGAAGG
ATTTGGACAAGCCTTTGTTGTATCTGAGGAACAAAAGCTTGATTGGGCTG
ACCTTTTCTCCATGATGACTCTTCCAGTTCATCTGAGGAAACCACATTTA
TTTCCTAAGCTCCCTCCTTCCCTCAGAGAGACCTTGGAAGTTTACTCAAT
GGAATTAAAAACCCTAGCCGAGAACCTAATATCGAAAATGGGAGAAGTGT
TAAATATCAAAGATGAAGAAATGAGAGAATTCTTTGAAAATGGACTGCAA
GGAATGAGGATGAATTATTACCCTCCATGTCCTCAGCCCGAGAAGGTTAT
GGGCCTGTCGCCGCATTCTGATGCGGCTGCACTTACCATTCTGCTACAAC
TTAATGAAGTGGAGGGTCTCCAGGTAAAGAAGGATGGAAAGTGGATTCCT
GTTACCCCACTCCCGGATGCTTTC
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