CF834079

Overview
NameCF834079
Unique NameCF834079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.211e-14
Identity = 56/221 (25.34%), Postives = 102/221 (46.15%), Query Frame = 1
Query:  130 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 786
            GH   ++ + ++ D   L S + D T  VW   +G+ L T +GH+  V+CCD +  S  +++GS D++ K+W V+TG  L T +  S P  +V+F     L V  + D    +  A   + +    AD+    V  +K          + P  + I++A  D  +++WD   G+ L+        K  + +          ++GS D    +W+ +T E++
Sbjct:   79 GHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLR-TLADEGNPPVSFVK----------FSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIV 288          

HSP 2 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 60/227 (26.43%), Postives = 98/227 (43.17%), Query Frame = 1
Query:  118 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTY 795
            + + GH   ++ +K++ +G+ L S A D    +W A +G    T  GH+  +     S DS  L++ S D+T K+W++ +G  L T    S      DF     L  I +  F E      VK         +G+ +  L      I    +      I+S   D + RIWD  +G+ LR    E      ++ +  + +G + LT +LD + KLWD      + TY
Sbjct:   33 LTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNL--IVSGSFDESVKIWEVK---------TGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADE--GNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTY 246          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.211e-14
Identity = 51/188 (27.13%), Postives = 90/188 (47.87%), Query Frame = 1
Query:  124 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA--RSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNR----TIISAGEDAIVRIWDTETGKLLRESDKE 669
            +K H+R +  ++ +KDG ++ S ++D T  +W +  GE +G  RGH   VW C  +  S  L +GS D+T ++WNV+T   + T    + A  + +  + G ++     D  +++ S              SGE V  L   + R    VW   +R     ++S G DA+V +W   T + + +  +E
Sbjct:  461 IKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSL------------SSGECVATLDNHEDR----VWALASRFDGSLLVSGGADAVVSVWKDVTEEYIAKQAEE 632          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: LIS1_CAEEL (Lissencephaly-1 homolog OS=Caenorhabditis elegans GN=lis-1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.524e-14
Identity = 56/225 (24.89%), Postives = 102/225 (45.33%), Query Frame = 1
Query:  124 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQS--------GESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 771
            +KGHE  ++ + +   GD + S ++DHT   W    G  + T+RGHN  V    +S D     + S DQT  +W+  T  A+L   + +     V++A  D      T    E NS  H+  +     D+S        G+ +  L   +  +    + P  + +IS  +D  +R+W+    + ++  +    H+  ++++A        +TGS+D S K+W+ R
Sbjct:  187 LKGHEHTVSSVTFLPTGDFVLSASRDHTIKQWDISTGYCVYTFRGHNDWVRMIRISNDGTLFASASLDQTVTVWSFATKSAKLVLRDHEHAVECVEWA-PDTAYTNVTGQQPEGNST-HI--LFSGSRDRSIKAWNINTGDVLFTLLAHENWVRGLAFHPKGKYLISVADDKTLRVWELSAQRCMKAIE---AHEHFVSTVAFHQTSPFVITGSVDMSCKVWECR 404          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: MDV1_KLULA (Mitochondrial division protein 1 OS=Kluyveromyces lactis GN=MDV1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.010e-14
Identity = 67/244 (27.46%), Postives = 109/244 (44.67%), Query Frame = 1
Query:  121 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-------------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFM---ELNSA-----IHVKRIAGDPADQSG----ESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 774
            L K H+  +T L ++   G +  + + DH+  VW     +++ T  GH  ++ C  + + S TLITG  D   KLW+++               A L+TF+      +     GD L   + D  +   +LNS      I +    G    Q       SVL+ K P            +  + +  +D IVR+WD  +GK++R  +   GH   ITSL    D  + +TG++D+S ++WD RT
Sbjct:  392 LPKAHDEDITCLDFDMPFGTMCSAGSLDHSVKVWDLSKKKQIATLHGHLASISCMQIDQYS-TLITGGRDAVLKLWDIDKAMADEASNSSEDNDACLYTFDSHVDEITAISFDGDNLVSGSQDRTVRQWDLNSGKCTQTIDISFATGPMRSQRNIPLRNSVLLTKEPPAI---GALQCFDAALATGTKDGIVRLWDLRSGKVVRMLE---GHTDAITSLQ--FDSVNLVTGAMDRSIRIWDLRT 626          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14
Identity = 62/232 (26.72%), Postives = 95/232 (40.95%), Query Frame = 1
Query:  130 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVW-----CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITT 792
            G ERP+  ++++ +G+   S +      VW +DN   +  +RGH    +G  W       D   + +TL TG+AD T  LW       L     +     R      GD L   + D    L                +G  +L+ +G    I      P    + S G DAI RIWD  +GK +   D+   H + I ++A + +G    T S D + K+WD R + L  T
Sbjct:  170 GGERPIAIVRFSNNGNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYPLCQAWDADSEQLTLATGAADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTTWRLWDV------------HTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDE---HIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHT 386          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: MUT11_CHLRE (Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.850e-14
Identity = 58/218 (26.61%), Postives = 99/218 (45.41%), Query Frame = 1
Query:  124 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP---ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 765
            + GH + +  +K++ DG LL S + D T  +W A  G R+ T  GH+  V     + +   L T + D + KLW+ ETGA L T    +      + D A G  LA  + D  + L               +SG  +  +      +  A +      ++++  D ++R+WDT+TG  L+   D+++     ++  A   +  + L  +LD  AKLWD
Sbjct:   36 LSGHTKAVAAVKFSPDGSLLASGSADRTVALWDAATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACLRTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDV------------RSGRCLREVPAHSDPVTSAAFSYDGSMVVTSSLDGLIRLWDTQTGHCLKTLFDRDS---PPVSFAAFTPNAKYVLCNTLDGRAKLWD 238          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TUP11_SCHPO (Transcriptional repressor tup11 OS=Schizosaccharomyces pombe GN=tup11 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.088e-13
Identity = 49/216 (22.69%), Postives = 98/216 (45.37%), Query Frame = 1
Query:  154 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKE---------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 774
            + ++ DG  L +  +D    +W     +    + GH   ++  D S +   +++GS D+TA+LW+VETG  +     ++   ++        A+   D F+ + S   + R+       SG  V  L+G +  +    + P +  ++S   D  +++W+ +  + +  S  +         TGH   + S+A + D    L+GS D+S + WD +T
Sbjct:  366 IAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIENGVTAI--------AISPNDQFIAVGSLDQIIRV----WSVSGTLVERLEGHKESVYSIAFSPDSSILLSGSLDKTIKVWELQATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFWDLQT 569          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: EBI_DROME (F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.088e-13
Identity = 68/265 (25.66%), Postives = 105/265 (39.62%), Query Frame = 1
Query:  139 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIA-GDPAD----QSGESVLILKGPQGRI-----------------DRAV--------------WGPL---------NRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTY 795
            + +T L +N DG LL + + D    +W  D G    T   H G ++    ++    +++   D+T  +W+  TG     F F S PA  VD+      A  +TD        IHV R+   +P       + E   I   PQG++                 DR                W P          N  + SA  D+ VR+WD E G  +    K   H + + S+A + DG H  +GS DK   +W  +T +L+ +Y
Sbjct:  411 KDVTSLDWNCDGSLLATGSYDGYARIWKTD-GRLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDWQTNQAFASCSTD------QRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWSMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTK---HTEPVYSVAFSPDGKHLASGSFDKCVHIWSTQTGQLVHSY 665          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TAF5_HUMAN (Transcription initiation factor TFIID subunit 5 OS=Homo sapiens GN=TAF5 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.645e-13
Identity = 58/224 (25.89%), Postives = 91/224 (40.62%), Query Frame = 1
Query:  121 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQ--------SGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 768
            ++ GH  P+    ++ D + L S ++D T  +W       L  Y+GHN  VW    S      ++G  D+ A+LW  +    L  F                LA +    F       +   +A   AD+        +G  V I  G +G I    + P  R + +   D  V +WD   G ++ E     GH  T+ SL  + DG    +GS+D + +LWDA
Sbjct:  538 ILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIF-------------AGHLADVNCTRFHP-----NSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGEL---KGHTDTVCSLRFSRDGEILASGSMDNTVRLWDA 740          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TAF5_DROME (Transcription initiation factor TFIID subunit 5 OS=Drosophila melanogaster GN=Taf5 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 56/229 (24.45%), Postives = 98/229 (42.79%), Query Frame = 1
Query:  124 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR--TLELITTYVT 801
            + GH  P+    +  + +LL SC++D T  +W       + TYRGH   VW    +      ++ S D+TA+LW  ++   L  F    S    V F             ++   S+    R+     + +G+SV ++ G +G +    +    R + S   D  + IWD   G L+    +   H  T+T++  + DG+      LD +  LWD    T + I+ ++T
Sbjct:  446 LMGHTGPVYRCAFAPEMNLLLSCSEDSTIRLWSLLTWSCVVTYRGHVYPVWDVRFAPHGYYFVSCSYDKTARLWATDSNQALRVFVGHLSDVDCVQFHPNSN--------YVATGSSDRTVRLWD---NMTGQSVRLMTGHKGSVSSLAFSACGRYLASGSVDHNIIIWDLSNGSLVTTLLR---HTSTVTTITFSRDGTVLAAAGLDNNLTLWDFHKVTEDYISNHIT 660          
The following BLAST results are available for this feature:
BLAST of CF834079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
WDR5B_MOUSE1.211e-1425.34WD repeat-containing protein 5B OS=Mus musculus GN... [more]
UTP13_SCHPO1.211e-1427.13Probable U3 small nucleolar RNA-associated protein... [more]
LIS1_CAEEL3.524e-1424.89Lissencephaly-1 homolog OS=Caenorhabditis elegans ... [more]
MDV1_KLULA6.010e-1427.46Mitochondrial division protein 1 OS=Kluyveromyces ... [more]
YIDC_SCHPO7.850e-1426.72Uncharacterized WD repeat-containing protein C227.... [more]
MUT11_CHLRE7.850e-1426.61Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut1... [more]
TUP11_SCHPO5.088e-1322.69Transcriptional repressor tup11 OS=Schizosaccharom... [more]
EBI_DROME5.088e-1325.66F-box-like/WD repeat-containing protein ebi OS=Dro... [more]
TAF5_HUMAN6.645e-1325.89Transcription initiation factor TFIID subunit 5 OS... [more]
TAF5_DROME1.133e-1224.45Transcription initiation factor TFIID subunit 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834079 ID=CF834079; Name=CF834079; organism=Citrus sinensis; type=EST; length=802bp
CTCCCACTAGCTCTATCTTTGCGGTCTCAAGGCTTTCCAACGCTCCACCG
GAAACTCCATTCGTCGCGGAATTCAGCAAAACAGAGAAAGAAGAAGAAAA
AAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTTAACA
TATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCCAAGGA
TCACACACCCACCGTTTGGTTCGCTGACAATGGCGAGCGTCTTGGCACCT
ACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGATTCG
ATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGAATGT
TGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCTGCTAGGT
CTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGATCCT
TTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAGGAGATCC
TGCTGATCAGAGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAGGGAA
GAATAGACAGAGCAGTTTGGGGACCTCTAAACAGGACTATCATTAGTGCT
GGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAACTGCT
TAGAGAGTCGGACAAGGAAACTGGTCATAAAAAGACTATAACATCGCTTG
CAAAAGCTGCTGATGGATCACATTTCCTCACTGGTTCCCTTGATAAATCT
GCTAAGCTGTGGGATGCCAGAACACTGGAGCTTATCACGACCTATGTGAC
GG
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