CF834079

Overview
NameCF834079
Unique NameCF834079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.133e-12
Identity = 58/232 (25.00%), Postives = 100/232 (43.10%), Query Frame = 1
Query:  124 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD------ARTLELITTYVT 801
            + GH+  ++ +++  DG+ L S ++D T  VW   +G  + T+ GH   V     S D   L++ S DQT+++W+  TG                  +     V+    F  +N+   ++ +AG            LK P  R  RA    +     +   D  +++WD  +G+ LR      GH   I +L     G + L+ S DK+ K+WD       +T+E  + +VT
Sbjct:  186 LHGHDHSVSSVRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTG-------------ETKMELRGHEHVVECAVFAPVNAYPAIRELAG------------LKPPAPRDTRAKSPGVYAA--TGSRDKTIKLWDALSGQCLRTL---VGHDNWIRALVFHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVT 387          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TG125_CAEEL (WD repeat-containing protein tag-125 OS=Caenorhabditis elegans GN=tag-125 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.480e-12
Identity = 49/223 (21.97%), Postives = 101/223 (45.29%), Query Frame = 1
Query:  124 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 786
            + GH+  +  + ++ D   + S + D T  ++         T +GHN  V+CC+ +  S  +++GS D++ ++W+V+TG  + T    S P  +V F   G  +A  + D  + +    + + I     D++     +   P G+            I+++  D+ +++WD   GK L++       K  I +      G   ++GS D    +W+ +T E++
Sbjct:  125 LTGHKLGVNDIAWSSDSRCVVSASDDKTLKIFEIVTSRMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSPNGKY-----------ILASNLDSTLKLWDFSKGKTLKQYTGHENSKYCIFANFSVTGGKWIISGSEDCKIYIWNLQTREIV 336          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TAF73_SCHPO (Transcription initiation factor TFIID subunit taf73 OS=Schizosaccharomyces pombe GN=taf73 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 52/216 (24.07%), Postives = 86/216 (39.81%), Query Frame = 1
Query:  130 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETG---HKKTITSLAKAADGSHFLTGSLDKSAKLWD 765
            GH RP+  +  +   + + SC++D    +W  D    +  Y GHN  +W    S       T S DQTA+LW+VE  A L  F    +    V F             ++   S+ H  R+      ++G +V +       +          ++ SA E  I+++WD      LR S++      H   + SL+ + D    ++G  D     WD
Sbjct:  401 GHTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSPFGYYFATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFH--------PNAAYLATGSSDHTTRMWD---VRTGGTVRVFNAHHSPVSALCMSADGLSLASADESGIIKVWD------LRSSNQHVSFVKHSSIVYSLSFSYDNKILVSGGADTDVNFWD 599          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TUP12_SCHPO (Transcriptional repressor tup12 OS=Schizosaccharomyces pombe GN=tup12 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 53/210 (25.24%), Postives = 89/210 (42.38%), Query Frame = 1
Query:  160 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLRESDKE--------TGHKKTITSLAKAADGSHFLTGSLDKSAKLW 762
            ++ DG  L +  +D    +W            GH   ++  D S+D  TL++GS D+T  LW+VE G Q    + D    +V F+   +        F+   S   V RI       SG  V  L G +  +    + P  + ++S   D  +++W+ +    +     KE        TGHK  I S+  + DG   ++GS D++ + W
Sbjct:  342 FSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKLILHTDDGVTTVMFSPDGQ--------FIAAGSLDKVIRI----WTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNTIKLWELQCVSNVAPSMYKEGGICKQTFTGHKDFILSVTVSPDGKWIISGSKDRTIQFW 539          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TAF5_ENCCU (Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon cuniculi GN=TAF5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 59/215 (27.44%), Postives = 93/215 (43.26%), Query Frame = 1
Query:  130 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV--ITTDPFMELNSAIHVKRIAGDPADQSGESVL-ILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 765
            GH  P+  LK+      L S ++D T  +W  D    L  Y+ H   VWC DV+ +     +G+ D+ A +W+V T           P R +  ++ D  AV       ++   S+ H  R+     D S  SV+ I  G    +         + + S  +D  V +WD ++ KLL    K  GH+ T+ S++    GS   +   D S +LWD
Sbjct:  320 GHSGPVYGLKFFSSNKFLVSSSQDCTVCLWSLDLLCLLAVYKAHAFPVWCVDVAPNDYFFASGAGDRQAIVWSVMT---------SKPERLIISSLSDVTAVKFHPNSSYLFTGSSDHRVRM----HDISTASVVRIFCGHTDTVTCMDVSHCGKFLASGSKDRTVLLWDIQSSKLL---GKYVGHENTVFSVSFCFYGSVLASCGADNSVRLWD 518          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: PKWA_THECU (Probable serine/threonine-protein kinase pkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 52/221 (23.53%), Postives = 97/221 (43.89%), Query Frame = 1
Query:  121 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR---SVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 774
            + +GH   +  + ++ DG ++ S ++D T  +W    G      +GH   V+    S D   + +GS D T +LW+V TG +       +PA    S+ F+    + V  +D      S +H+  +A      SGE++   +G    +    + P    + S  +D  +R+WD    +   E     GH + + S+A   +G+   + S D + ++W   T
Sbjct:  538 VFEGHTHYVLDIAFSPDGSMVASGSRDGTARLWNVATGTEHAVLKGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDV--LQAPAENVVSLAFSPDGSMLVHGSD------STVHLWDVA------SGEALHTFEGHTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQE---EHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIWPIAT 741          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TAF5_SCHPO (Transcription initiation factor TFIID subunit 5 OS=Schizosaccharomyces pombe GN=taf5 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 54/217 (24.88%), Postives = 88/217 (40.55%), Query Frame = 1
Query:  118 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 765
            + +  H  P+    ++ D   L SC++D +  +W  D    L  Y+GH G VW            T S DQTA+LW+ +    L  F    S    V F      A + T    +      V R         G SV +  G    +      P   T+ SA  + ++ +WD  TG+ ++      GH+  I SL+ + + +  ++G  D + + WD
Sbjct:  373 VRLLSHSGPVYGTTFSPDNKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNS--AYVLTGSSDKTCRLWDVHR---------GHSVRVFNGHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTM---RGHRGNIYSLSFSRESTVLVSGGSDCTVRAWD 575          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12
Identity = 54/223 (24.22%), Postives = 99/223 (44.39%), Query Frame = 1
Query:  130 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITT 792
            GH+  +T ++++  G+LL S ++D T  +W  D   +   ++ H   V   D S D   L T S D++ K+W++     L++ +      R   F+   +L V  + D  +++    + K+   + +D  G +  +   P G             I SAG D  V++WD    KLL+     +G    +  ++    G++ +T S D + K+ D     LI T
Sbjct:   58 GHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN-KQCVNNFSDSVGFANFVDFNPSG-----------TCIASAGSDQTVKVWDVRVNKLLQHYQVHSG---GVNCISFHPSGNYLITASSDGTLKILDLLEGRLIYT 265          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: GROU_DROME (Protein groucho OS=Drosophila melanogaster GN=gro PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 7.347e-12
Identity = 55/205 (26.83%), Postives = 89/205 (43.41%), Query Frame = 1
Query:  154 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 765
            L  + D  + FSC  D    VW   N   +  ++GH     C D+S D   L TG  D T + W++  G QL   +F S   S+ +   GD LAV   +  +E+   +H  +            VL L+          +    +  +S G+D ++  W T  G  + +S KET    ++ S   + D  + +TGS DK A +++
Sbjct:  540 LAISPDSKVCFSCCSDGNIAVWDLHNEILVRQFQGHTDGASCIDISPDGSRLWTGGLDNTVRSWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSHVEV---LHASKPDKYQLHLHESCVLSLR----------FAACGKWFVSTGKDNLLNAWRTPYGASIFQS-KET---SSVLSCDISTDDKYIVTGSGDKKATVYE 727          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12
Identity = 46/224 (20.54%), Postives = 96/224 (42.86%), Query Frame = 1
Query:  124 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITT 792
            + GH   +    ++ D  L+ SC+ D    V+   +G  + T +GH   V+CC  +     + +GS D+T ++W    G  +F+    + P  SV F             ++   S   + RI         ++++  + P   I    + P  + I+++  +  +++WD +  ++L+E       K  + +      G   ++GS D    +W+ +T E++ T
Sbjct:  144 LMGHRLGINEFSWSSDSKLIVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGTLIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCFN--------RDGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPP--ITHVKFSPNGKYILASNLNNTLKLWDYQKLRVLKEYTGHENSKYCVAANFSVTGGKWIVSGSEDHKVYIWNLQTREILQT 357          
The following BLAST results are available for this feature:
BLAST of CF834079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
NUDF_CRYNE1.133e-1225.00Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
TG125_CAEEL1.480e-1221.97WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
TAF73_SCHPO2.525e-1224.07Transcription initiation factor TFIID subunit taf7... [more]
TUP12_SCHPO4.307e-1225.24Transcriptional repressor tup12 OS=Schizosaccharom... [more]
TAF5_ENCCU4.307e-1227.44Transcription initiation factor TFIID subunit 5 OS... [more]
PKWA_THECU4.307e-1223.53Probable serine/threonine-protein kinase pkwA OS=T... [more]
TAF5_SCHPO5.625e-1224.88Transcription initiation factor TFIID subunit 5 OS... [more]
WD51B_HUMAN7.347e-1224.22WD repeat-containing protein 51B OS=Homo sapiens G... [more]
GROU_DROME7.347e-1226.83Protein groucho OS=Drosophila melanogaster GN=gro ... [more]
YZLL_CAEEL9.596e-1220.54Uncharacterized WD repeat-containing protein K04G1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834079 ID=CF834079; Name=CF834079; organism=Citrus sinensis; type=EST; length=802bp
CTCCCACTAGCTCTATCTTTGCGGTCTCAAGGCTTTCCAACGCTCCACCG
GAAACTCCATTCGTCGCGGAATTCAGCAAAACAGAGAAAGAAGAAGAAAA
AAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTTAACA
TATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCCAAGGA
TCACACACCCACCGTTTGGTTCGCTGACAATGGCGAGCGTCTTGGCACCT
ACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGATTCG
ATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGAATGT
TGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCTGCTAGGT
CTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGATCCT
TTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAGGAGATCC
TGCTGATCAGAGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAGGGAA
GAATAGACAGAGCAGTTTGGGGACCTCTAAACAGGACTATCATTAGTGCT
GGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAACTGCT
TAGAGAGTCGGACAAGGAAACTGGTCATAAAAAGACTATAACATCGCTTG
CAAAAGCTGCTGATGGATCACATTTCCTCACTGGTTCCCTTGATAAATCT
GCTAAGCTGTGGGATGCCAGAACACTGGAGCTTATCACGACCTATGTGAC
GG
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