CF834079

Overview
NameCF834079
Unique NameCF834079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TLE3_HUMAN (Transducin-like enhancer protein 3 OS=Homo sapiens GN=TLE3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.646e-11
Identity = 53/205 (25.85%), Postives = 88/205 (42.93%), Query Frame = 1
Query:  154 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 765
            L  + D  + FSC  D    VW   N   +  ++GH     C D+S D   L TG  D T + W++  G QL   +F S   S+ +   G+ LAV      +E+   +H  +            VL LK          +    +  +S G+D ++  W T  G  + +S + +    ++ S   +AD  + +TGS DK A +++
Sbjct:  582 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV---LHHTKPDKYQLHLHESCVLSLK----------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS----SVLSCDISADDKYIVTGSGDKKATVYE 769          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: TLE1_DANRE (Protein groucho-1 (Fragment) OS=Danio rerio GN=gro1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 53/205 (25.85%), Postives = 87/205 (42.44%), Query Frame = 1
Query:  154 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 765
            L  + D  + FSC  D    VW   N   +  ++GH     C D+S D   L TG  D T + W++  G QL   +F S   S+ +   G+ LAV      +E+   +H  +            VL LK               +  +S G+D ++  W T  G  + +S + +    ++ S   +AD  + +TGS DK A +++
Sbjct:  345 LAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISHDGPKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV---LHHTKPDKYQLHLHESCVLSLKSAY----------CGKWFVSTGKDNLLNAWRTPYGASIFQSKESS----SVLSCDISADDKYIVTGSGDKKATVYE 532          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: SCON2_NEUCR (Sulfur controller 2 OS=Neurospora crassa GN=scon-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 50/193 (25.91%), Postives = 88/193 (45.60%), Query Frame = 1
Query:  121 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSL 699
            ++KGHE  +T L+   D ++L + + D T  +W  +  E + T  GH   +       D   LI+GS D T K+WN  TG  L TF   + +       G  LA  ++D  +++              D + +    LKG    ++       +RT+ SA +D  +++WD +T +++R  +   GH + +  L
Sbjct:  289 VLKGHENGVTCLQL--DDNILATGSYDTTIKIWNIETEECIRTLVGHTAGIRALQF--DDSKLISGSLDHTIKVWNWHTGECLSTFAAHTDSVISVHFDGHLLASGSSDKTVKI-------------FDFNSKETYCLKGHSDWVNSTHVDIKSRTVFSASDDTTIKLWDLDTRQVIRTYEGHVGHVQQVLIL 464          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 53/223 (23.77%), Postives = 98/223 (43.95%), Query Frame = 1
Query:  130 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITT 792
            GH+  +T ++++  G+LL S ++D T  +W  D   +   ++ H   V   D S D   L T S D++ K+W++     L++ +      R   F+   +L V  + D  +++    + K+   + +D  G +  +   P G             I SAG D  V++WD    KLL+     +G    +  ++     ++ +T S D + K+ D     LI T
Sbjct:   58 GHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTN-KQCVNNFSDSVGFANFVDFNPSG-----------TCIASAGSDQTVKVWDVRVNKLLQHYQVHSG---GVNCISFHPSDNYLVTASSDGTLKILDLLEGRLIYT 265          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: UTP15_XENLA (U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus laevis GN=utp15 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 51/213 (23.94%), Postives = 97/213 (45.54%), Query Frame = 1
Query:  160 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGR-IDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELITTY 795
            Y  DG LL +  +D    ++       L  + GH+ AV   D + D   +++GS D T+KLW++  G ++ ++         D+      + +  D F    S  H  ++     D+S     ++    G+ ++  +  P    ++SAG    V++WD   G  L  S +   H KT+T L  ++ G   L+GSLD+  K++     +++ ++
Sbjct:   88 YRGDGKLLAAGCEDSVVQLFDISGKAALRQFSGHSKAVHFVDFTSDKYRIVSGSDDYTSKLWDIPNGIEIASYK-----EHTDYIRCGCTSSLNNDLF-ATGSYDHTIKVFDGRTDKS-----VMSMDHGQPVESVLLFPSGGLLVSAG-GRYVKVWDILKGGQLLVSLR--NHHKTVTCLCLSSSGQRLLSGSLDRHVKVYSTMNYKVVHSF 286          
BLAST of CF834079 vs. ExPASy Swiss-Prot
Match: PRP4_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.220e-11
Identity = 54/216 (25.00%), Postives = 86/216 (39.81%), Query Frame = 1
Query:  130 GHERPLTYLKYNKDGDLLFSCAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE-TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAGDPADQSGESVLILKGPQGRIDRAVWGPLNRTIISAGEDAIVRIWDTETGKLLRESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 771
            G +RPLT   +++DG +L +C+      +W        +   + H         S     L T SAD+TAKLW  + T  Q F  + D  AR      G  L   + D    L                +G  +L+ +G    +    +        S G D++ R+WD  TG+ +       GH K + S+  + +G H  +G  D   ++WD R
Sbjct:  253 GDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDI------------NTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQ---GHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLR 453          
The following BLAST results are available for this feature:
BLAST of CF834079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
TLE3_HUMAN3.646e-1125.85Transducin-like enhancer protein 3 OS=Homo sapiens... [more]
TLE1_DANRE4.762e-1125.85Protein groucho-1 (Fragment) OS=Danio rerio GN=gro... [more]
SCON2_NEUCR4.762e-1125.91Sulfur controller 2 OS=Neurospora crassa GN=scon-2... [more]
WD51B_PONAB6.220e-1123.77WD repeat-containing protein 51B OS=Pongo abelii G... [more]
UTP15_XENLA6.220e-1123.94U3 small nucleolar RNA-associated protein 15 homol... [more]
PRP4_ARATH6.220e-1125.00U4/U6 small nuclear ribonucleoprotein PRP4-like pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04N24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834079 ID=CF834079; Name=CF834079; organism=Citrus sinensis; type=EST; length=802bp
CTCCCACTAGCTCTATCTTTGCGGTCTCAAGGCTTTCCAACGCTCCACCG
GAAACTCCATTCGTCGCGGAATTCAGCAAAACAGAGAAAGAAGAAGAAAA
AAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTTAACA
TATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCCAAGGA
TCACACACCCACCGTTTGGTTCGCTGACAATGGCGAGCGTCTTGGCACCT
ACCGCGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGATTCG
ATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGAATGT
TGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCTGCTAGGT
CTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGATCCT
TTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAGGAGATCC
TGCTGATCAGAGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAGGGAA
GAATAGACAGAGCAGTTTGGGGACCTCTAAACAGGACTATCATTAGTGCT
GGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAACTGCT
TAGAGAGTCGGACAAGGAAACTGGTCATAAAAAGACTATAACATCGCTTG
CAAAAGCTGCTGATGGATCACATTTCCTCACTGGTTCCCTTGATAAATCT
GCTAAGCTGTGGGATGCCAGAACACTGGAGCTTATCACGACCTATGTGAC
GG
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