CF834082

Overview
NameCF834082
Unique NameCF834082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1058 contig Csv1_Contig1058:1..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: COMT2_POPTM (Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 40/98 (40.82%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ DE  L  LKNCY ALP+ GK++ +   +   P  S A++ +  +D I+L   P G+ERT +E+  LA  AGFKG    C   N +V+EF K
Sbjct:  265 WICHDWSDEHCLTFLKNCYDALPENGKVILVECILPVAPDTSLATKGVMHVDVIMLAHNPGGKERTDREFESLARGAGFKGFEVMCCAFNTHVIEFRK 362          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: COMT1_OCIBA (Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ DE  +K LKNCY ALP  GK++     + E P    A++ +  +D I+L   P G+ERT++E+  LA  AGFK  +  C   N ++ME LK
Sbjct:  264 WICHDWSDEHCVKFLKNCYDALPQNGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: COMT1_CAPAN (Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.620e-16
Identity = 42/98 (42.86%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ DE  LK LKNCY+ALP  GK+L     + E P  SAA++    +D ++L   P G+ERT++E+  LA  AGF G    C     +VMEF K
Sbjct:  262 WICHDWSDEHCLKFLKNCYEALPANGKVLVAECILPETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEFHK 359          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: OMT1_ARATH (Quercetin 3-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.763e-16
Identity = 36/98 (36.73%), Postives = 63/98 (64.29%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ DE  +K LKNCY++LP+ GK++     + E P +S +++++  +D I+L   P G+ERT++E+  LA  +GFKG+   C    + ++E LK
Sbjct:  264 WICHDWSDEHCVKFLKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDAFGVNLIELLK 361          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: COMT1_POPTM (Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ D   LK LKNCY ALP+ GK++ +   +   P  S A++ +  +D I+L   P G+ERT++E+  LA  AGF+G    C   N +V+EF K
Sbjct:  266 WICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCAFNTHVIEFRK 363          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: COMT1_POPKI (Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ D   LK LKNCY ALP+ GK++ +   +   P  S A++ +  +D I+L   P G+ERT++E+  LA  AGF+G    C   N +V+EF K
Sbjct:  266 WICHDWSDAHCLKFLKNCYDALPENGKVILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLANGAGFQGFEVMCCAFNTHVIEFRK 363          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 39/98 (39.80%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ D+   K LKNCY ALP+ GK++     +   P  S A++ +  +D I+L   P G+ERT++E+  LA  AGF+G    C     +VMEFLK
Sbjct:  267 WICHDWSDDHCAKFLKNCYDALPNIGKVIVAECVLPVYPDTSLATKNVIHIDCIMLAHNPGGKERTQKEFETLAKGAGFQGFQVMCCAFGTHVMEFLK 364          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: COMT1_CATRO (Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.990e-15
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ D   LK LKNC++ALP+ GK++     + E P ++ +++    +D I+L   P G+ERT++E+  LA  AGF+G    C   N ++ME LK
Sbjct:  266 WICHDWSDAHCLKFLKNCHEALPENGKVILAECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCAYNSWIMELLK 363          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: COMT2_OCIBA (Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.211e-15
Identity = 36/98 (36.73%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+ H++ D   +K LK CY+ALP+ GK++     + E P    A++ +  +D I+L   P G+ERT++E+  LA  +GFK  +  C   N ++ME LK
Sbjct:  264 WICHDWSDAHCVKFLKKCYEALPENGKVILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQVLAKASGFKQFNKVCCAYNSWIMELLK 361          
BLAST of CF834082 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.827e-14
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = -3
Query:  179 WMLHNFDDEQTLKLLKNCYKALPDGGKLLNINSTISEVPQNSAASREISILDTILLIQIPHGRERTKQEYNELAIKAGFKGVSYECGVCNLYVMEFLK 472
            W+LH++ DE  +K+L  CY++L  GGK++ + S I  +P+++  S  +  LD   L+    G+ER+K+++  LA K GF  V   C   + +VME  K
Sbjct:  267 WVLHDWSDEHCVKILNKCYESLAKGGKIILVESLIPVIPEDNLESHMVFSLDCHTLVHNQGGKERSKEDFEALASKTGFSTVDVICCAYDTWVMELYK 364          
The following BLAST results are available for this feature:
BLAST of CF834082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
COMT2_POPTM1.620e-1640.82Caffeic acid 3-O-methyltransferase 2 OS=Populus tr... [more]
COMT1_OCIBA1.620e-1639.80Caffeic acid 3-O-methyltransferase 1 OS=Ocimum bas... [more]
COMT1_CAPAN1.620e-1642.86Caffeic acid 3-O-methyltransferase OS=Capsicum ann... [more]
OMT1_ARATH2.763e-1636.73Quercetin 3-O-methyltransferase 1 OS=Arabidopsis t... [more]
COMT1_POPTM6.155e-1639.80Caffeic acid 3-O-methyltransferase 1 OS=Populus tr... [more]
COMT1_POPKI6.155e-1639.80Caffeic acid 3-O-methyltransferase 1 OS=Populus ki... [more]
COMT1_EUCGU1.791e-1539.80Caffeic acid 3-O-methyltransferase OS=Eucalyptus g... [more]
COMT1_CATRO3.990e-1537.76Caffeic acid 3-O-methyltransferase OS=Catharanthus... [more]
COMT2_OCIBA5.211e-1536.73Caffeic acid 3-O-methyltransferase 2 OS=Ocimum bas... [more]
IMT1_MESCR9.827e-1435.71Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04O03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834082 ID=CF834082; Name=CF834082; organism=Citrus sinensis; type=EST; length=588bp
TTTTTTTTTTTTTTACGGGAATCAATCTCCCTATAAGAGATTTATCATTG
ATAAAACGAAAGAGATTACATAAGAGAAGCCCTCAATCCAAAGGAAAGAG
ATAACAAGACAAACCGGAAATTGAAAACAACCCAAGAAAGCTAAGGAGAT
CTTTCCGAATAGAGAAAAAAGCAATCTATTTCAAGAACTCCATAACATAT
AAATTACATACACCACATTCGTAGCTGACACCTTTAAATCCAGCTTTAAT
TGCCAATTCATTGTATTCTTGTTTGGTGCGCTCTCTTCCATGAGGAATTT
GGATCAACAAAATTGTATCCAAAATAGAGATTTCCCTTGAAGCCGCACTA
TTTTGAGGCACTTCTGAAATTGTTGAATTAATATTGAGCAGCTTCCCACC
ATCTGGAAGAGCTTTGTAACAATTCTTCAACAATTTCAAAGTTTGCTCAT
CATCAAAATTGTGAAGCATCCAACTTTTTCCGGTATACTATTTTTGAGTT
TTATTGTTTTTTTTTCGATTTTCATAATATCTTGTTATCCTTTTGAGTTT
TTCAATGAAAAAATTGACGTCAAATGAGTAAATTGTCC
back to top