CF834085

Overview
NameCF834085
Unique NameCF834085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 7.958e-59
Identity = 110/174 (63.22%), Postives = 141/174 (81.03%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            M +  + +Y+++FK+VLIG+SGVGK+N+LSRFTRNEF  +S++TIGVEF+TRT+ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+TK QT+  V RWL+EL DHA++ IV+M+ GNKSDL+  R V  E+    AE  GL FLETSAL++TNVE AF+T+L EI+
Sbjct:    1 MGNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 174          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.315e-58
Identity = 110/174 (63.22%), Postives = 141/174 (81.03%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            M +  + +Y+++FK+VLIG+SGVGK+N+LSRFTRNEF  +S++TIGVEF+TRT+ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+TK QT+  V RWL+EL DHA++ IV+M+ GNKSDL+  R V  E+    AE  GL FLETSAL++TNVE AF+T+L EI+
Sbjct:    1 MGNGKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 174          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 6.737e-58
Identity = 107/165 (64.85%), Postives = 137/165 (83.03%), Query Frame = 2
Query:  224 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            +YLFKIV+IGDS VGKSN+L+R+ RNEF   SK+TIGVEF T+++ ++GK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDIT+  TF+NV RWL EL  H+D+ +  M+ GNK DL  +RAV+ E+G SLAE EGL F+ETSAL++TNV+ AF+ ++ EIY
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIY 174          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.828e-56
Identity = 101/170 (59.41%), Postives = 137/170 (80.59%), Query Frame = 2
Query:  212 DHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 721
            + E +YLFKIV+IGDS VGKSN+L+RFTRNEF  ++K+TIGV+F T++++++ KT+ AQ WDTAGQER+RA+TS YYRGAVGA++VYDIT + +F NV RWL ELR+ A+ +I+IMM GNKSDL   R V  ++  + AE   +SFLETSAL +TNV ++F+ +LT+IYH
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYH 173          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.170e-50
Identity = 91/168 (54.17%), Postives = 128/168 (76.19%), Query Frame = 2
Query:  218 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIYH 721
            EYDYL KIV+IGDSGVGKSN+LSR+ +NEF +   STIGVEF+T+TL+++ K +K Q+WDTAGQE+Y +IT +YY+GA+GAL+VY+I  R +F+N+ +WL++ R++A  +  IM+ GNKSDL   R V+  +G   AEK  + F+ETSAL++ NVE AF  +   IY+
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYY 174          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.837e-48
Identity = 94/166 (56.63%), Postives = 119/166 (71.69%), Query Frame = 2
Query:  221 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+ N+ IM+ GNK DL H RAVT E+G   A++ GL FLETSA  A NVE+AF     EIY
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIY 168          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.837e-48
Identity = 94/166 (56.63%), Postives = 119/166 (71.69%), Query Frame = 2
Query:  221 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            Y YLFK ++IGD+GVGKS +L +FT   F      TIGVEF  R + ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF+++  WL + R HA+ N+ IM+ GNK DL H RAVT E+G   A++ GL FLETSA  A NVE+AF     EIY
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIY 168          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.839e-48
Identity = 90/165 (54.55%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  221 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA S++  M+ GNK D+N  R V++E G  LA   G+ FLETSA  +TNVE+AF T+  +I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDI 169          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.839e-48
Identity = 90/165 (54.55%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  221 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA S++  M+ GNK D+N  R V++E G  LA   G+ FLETSA  +TNVE+AF T+  +I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDI 169          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.839e-48
Identity = 90/165 (54.55%), Postives = 124/165 (75.15%), Query Frame = 2
Query:  221 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            YDYLFK++LIGDSGVGK+ +L RF+ + F     STIG++F  RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G +LVYDIT  ++FDN+  W+R + +HA S++  M+ GNK D+N  R V++E G  LA   G+ FLETSA  +TNVE+AF T+  +I
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDI 169          
The following BLAST results are available for this feature:
BLAST of CF834085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_HUMAN7.958e-5963.22Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_RABIT2.315e-5863.22Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
ARA4_ARATH6.737e-5864.85Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RB11C_DICDI4.828e-5659.41Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI5.170e-5054.17Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTV4_VOLCA2.837e-4856.63GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE2.837e-4856.63GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB8B_RAT4.839e-4854.55Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB4.839e-4854.55Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE4.839e-4854.55Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834085 ID=CF834085; Name=CF834085; organism=Citrus sinensis; type=EST; length=799bp
GGGGGGGCGGACCCCCCNANTTTTTTTTTTTTGTTGTTCCATTCTCTCTC
TCTCTCCCTCCCTCTCTCCCATTGGACAACAAACAACAATCCCCTTGCCC
AATTTCTCTTCCTCCAATCACCGTACCAGGACTCGCATTCTCTCTCGATC
TATCTGCCTTCAAAAGTTCTGTTTGAGAGAGATCGGAGAGGTTGTGATGG
CGAGTAGAGTGGATCACGAGTACGACTATCTGTTCAAGATCGTGTTGATC
GGCGACTCTGGCGTCGGGAAATCGAACATTCTTTCGAGGTTTACGAGGAA
TGAGTTTTGTTTGGAATCTAAATCAACCATCGGTGTTGAATTCGCCACCA
GGACTCTTCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACT
GCAGGCCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGC
AGTTGGTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACA
ATGTCCTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATT
GTCATAATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGT
TACCGAGGAGGATGGCCATTCTTTAGCTGAGAAGGAAGGTCTCTCATTTC
TTGAGACATCAGCTTTGGAAGCAACCAATGTTGAGAAGGCATTCCAGACC
ATTTTGACAGAGATTTACCACATCATAAGCAAAAAAGCATTAGCAGCCCA
ACAGGCATCTGCTAATACCGCTCTTCCTGGTCAAGGAACCACTATTAAT
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