CF834085

Overview
NameCF834085
Unique NameCF834085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.622e-19
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  E  +T+GVE  T         +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W ++L      NI I++ GNK D+  ++   +        K+ L + + SA    N EK F
Sbjct:   11 FKVVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDVKDMKVKAKP--ILFHRKKNLQYYDISARSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAB28_RAT (Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.622e-19
Identity = 56/177 (31.64%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK-TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            M+   +   D   KIV++GD   GK+++ + F +  F  + K TIG++F  R + + G   V  Q+WD  GQ     +   Y  GA G LLVYDIT  Q+F+N+  W   ++ + + +++  ++ + GNK DL H+R V  +      ++ G S    SA    +V   FQ +  EI
Sbjct:    1 MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 177          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAB28_MOUSE (Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.622e-19
Identity = 56/177 (31.64%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  197 MASRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK-TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW---LRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            M+   +   D   KIV++GD   GK+++ + F +  F  + K TIG++F  R + + G   V  Q+WD  GQ     +   Y  GA G LLVYDIT  Q+F+N+  W   ++ + + +++  ++ + GNK DL H+R V  +      ++ G S    SA    +V   FQ +  EI
Sbjct:    1 MSDSEEESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 177          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.119e-19
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = 2
Query:  230 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIV-IMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            L K+ ++GD GVGK+ +  +F  N F      TI   +  + + ++ +     I DTAGQ+   A+   + R   G +LVY +T R +FD +  +  ++    DS+ V IMM GNKSDL+  R VT ++G  LA   G+SF+E SA   +N+E+ F
Sbjct:    9 LVKLCIMGDGGVGKTAVTIQFISNHFVHYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVF 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.767e-19
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = 2
Query:  230 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            L K+ ++GD GVGK+++  +F  N F      TI   +  + L ++ +     I DTAGQ+   A+   + R   G +LVY +T R +FD V ++ RE  +R     ++ IMM GNKSDL+  R VT ++G  LA   G+SF+E SA    NVE+ F
Sbjct:   10 LVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCL-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQV-QFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEEVF 164          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RB32D_DICDI (Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 54/167 (32.34%), Postives = 95/167 (56.89%), Query Frame = 2
Query:  236 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELR------DHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLS-FLETSALEATNVEKAFQTILTEI 715
            K++LIGD  VGK++IL R   ++F  E KSTIG +F ++T          Q+WDTAGQE+Y  +TSA++R +   +LV+DI+   +F N+  W ++ +      D  +  + I++  NKSD +  RAV + + +       ++ + E SA  + N++++   ++  I
Sbjct:   11 KLILIGDVNVGKTSILHRLIFSKFTEEYKSTIGADFLSKTFYQNDIITHIQLWDTAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQFKSKSINPDGTEKQLPILLLANKSD-SLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVI 176          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +F ++ F  E   TI   +  + + ++ +     + DTAGQE Y A+   Y R   G LLVY IT R +F+ +  + ++ LR        +++  NK DL + R V   +G  LA   G  F+ETSA    NV++AFQ ++ EI
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREI 171          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.614e-19
Identity = 55/171 (32.16%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  209 VDHEYDYL--FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            VD++ D +  FK+VL+GD GVGK+  ++R    EF     +T GV  +   L      ++  IWDTAGQE+   +   YY GA  A++++D+T R T+ N+ +W ++L    + N+ I++ GNK D    +    +   +   K  L + + SA      EK F  IL ++
Sbjct:    2 VDNKQDVVAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTRICE-NVPIVLVGNKVDSKDSKVKARQ--ITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKL 169          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.720e-19
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++GD GVGKS +  +  ++ F  E   TI   +  +  +++G+     + DTAGQE Y A+   Y R   G LLVY+IT R +FD +  + ++ LR        +++  NK DL   R V+  +G  LA+     ++ETSA    NVE+AF +++  I
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKC-EIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.720e-19
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK++++GD G GK+  L R    EF   ++ T+GV+            ++ + WDTAGQE+Y  +  AYY     A++++D+T R T+ N+ RW R+LR     NI I++ GNK D+   +   +    S   K+ L + E SA    N EK F
Sbjct:   14 FKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLR-RVCKNIPIVLCGNKVDVPSRQIKPKH--VSYHRKKCLQYYEMSAKNNCNFEKPF 164          
The following BLAST results are available for this feature:
BLAST of CF834085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RANT_MOUSE1.622e-1934.42GTP-binding nuclear protein Ran, testis-specific i... [more]
RAB28_RAT1.622e-1931.64Ras-related protein Rab-28 OS=Rattus norvegicus GN... [more]
RAB28_MOUSE1.622e-1931.64Ras-related protein Rab-28 OS=Mus musculus GN=Rab2... [more]
RASX_DICDI2.119e-1935.90Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RASY_DICDI2.767e-1937.58Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RB32D_DICDI3.614e-1932.34Ras-related protein Rab-32D OS=Dictyostelium disco... [more]
RAS_LENED3.614e-1934.57Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAN_TETPY3.614e-1932.16GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAS_SCHPO4.720e-1933.95Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RAN4_ARATH4.720e-1934.42GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834085 ID=CF834085; Name=CF834085; organism=Citrus sinensis; type=EST; length=799bp
GGGGGGGCGGACCCCCCNANTTTTTTTTTTTTGTTGTTCCATTCTCTCTC
TCTCTCCCTCCCTCTCTCCCATTGGACAACAAACAACAATCCCCTTGCCC
AATTTCTCTTCCTCCAATCACCGTACCAGGACTCGCATTCTCTCTCGATC
TATCTGCCTTCAAAAGTTCTGTTTGAGAGAGATCGGAGAGGTTGTGATGG
CGAGTAGAGTGGATCACGAGTACGACTATCTGTTCAAGATCGTGTTGATC
GGCGACTCTGGCGTCGGGAAATCGAACATTCTTTCGAGGTTTACGAGGAA
TGAGTTTTGTTTGGAATCTAAATCAACCATCGGTGTTGAATTCGCCACCA
GGACTCTTCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACT
GCAGGCCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGC
AGTTGGTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACA
ATGTCCTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATT
GTCATAATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGT
TACCGAGGAGGATGGCCATTCTTTAGCTGAGAAGGAAGGTCTCTCATTTC
TTGAGACATCAGCTTTGGAAGCAACCAATGTTGAGAAGGCATTCCAGACC
ATTTTGACAGAGATTTACCACATCATAAGCAAAAAAGCATTAGCAGCCCA
ACAGGCATCTGCTAATACCGCTCTTCCTGGTCAAGGAACCACTATTAAT
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