CF834085

Overview
NameCF834085
Unique NameCF834085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASN_RAT (GTPase NRas OS=Rattus norvegicus GN=Nras PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++   DS ++ +++ GNK DL   R V  +  H LA+  G+ F+ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASN_PIG (GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++   DS ++ +++ GNK DL   R V  +  H LA+  G+ F+ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASN_MOUSE (GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++   DS ++ +++ GNK DL   R V  +  H LA+  G+ F+ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASN_MONDO (GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++   DS ++ +++ GNK DL   R V  +  H LA+  G+ F+ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASN_HUMAN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++   DS ++ +++ GNK DL   R V  +  H LA+  G+ F+ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASN_CAVPO (GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 56/162 (34.57%), Postives = 90/162 (55.56%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++   DS ++ +++ GNK DL   R V  +  H LA+  G+ F+ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 55/182 (30.22%), Postives = 93/182 (51.10%), Query Frame = 2
Query:  230 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSN--------------------IVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            L+K+V++GD GVGK+ +  +     F      TI   +  + + ++G+    ++ DTAGQE Y A+   + R   G +LVY I+ R +F  + ++  +++   +S                     + IM+ GNKSD    R V+ ++GH+LA + G  F E SA   TNVEKAF  ++ ++
Sbjct:    8 LYKLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSYRKQVV-IDGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFTEASAKTRTNVEKAFYDVVKQL 188          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_XENTR (GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
The following BLAST results are available for this feature:
BLAST of CF834085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_RAT2.343e-1834.57GTPase NRas OS=Rattus norvegicus GN=Nras PE=2 SV=1[more]
RASN_PIG2.343e-1834.57GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1[more]
RASN_MOUSE2.343e-1834.57GTPase NRas OS=Mus musculus GN=Nras PE=2 SV=1[more]
RASN_MONDO2.343e-1834.57GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 ... [more]
RASN_HUMAN2.343e-1834.57GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1[more]
RASN_CAVPO2.343e-1834.57GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1[more]
RAS2_NEUCR2.343e-1830.22Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]
RAN_XENTR2.343e-1833.77GTP-binding nuclear protein Ran OS=Xenopus tropica... [more]
RAN_XENLA2.343e-1833.77GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT2.343e-1833.77GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834085 ID=CF834085; Name=CF834085; organism=Citrus sinensis; type=EST; length=799bp
GGGGGGGCGGACCCCCCNANTTTTTTTTTTTTGTTGTTCCATTCTCTCTC
TCTCTCCCTCCCTCTCTCCCATTGGACAACAAACAACAATCCCCTTGCCC
AATTTCTCTTCCTCCAATCACCGTACCAGGACTCGCATTCTCTCTCGATC
TATCTGCCTTCAAAAGTTCTGTTTGAGAGAGATCGGAGAGGTTGTGATGG
CGAGTAGAGTGGATCACGAGTACGACTATCTGTTCAAGATCGTGTTGATC
GGCGACTCTGGCGTCGGGAAATCGAACATTCTTTCGAGGTTTACGAGGAA
TGAGTTTTGTTTGGAATCTAAATCAACCATCGGTGTTGAATTCGCCACCA
GGACTCTTCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACT
GCAGGCCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGC
AGTTGGTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACA
ATGTCCTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATT
GTCATAATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGT
TACCGAGGAGGATGGCCATTCTTTAGCTGAGAAGGAAGGTCTCTCATTTC
TTGAGACATCAGCTTTGGAAGCAACCAATGTTGAGAAGGCATTCCAGACC
ATTTTGACAGAGATTTACCACATCATAAGCAAAAAAGCATTAGCAGCCCA
ACAGGCATCTGCTAATACCGCTCTTCCTGGTCAAGGAACCACTATTAAT
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