CF834085

Overview
NameCF834085
Unique NameCF834085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_MOUSE (GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_MACFA (GTP-binding nuclear protein Ran OS=Macaca fascicularis GN=RAN PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_HUMAN (GTP-binding nuclear protein Ran OS=Homo sapiens GN=RAN PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_CHICK (GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 52/154 (33.77%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            +K  +WDTAGQE++  +   YY  A  A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +        K+ L + + SA    N EK F
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: GSP1_ENCCU (GTP-binding nuclear protein GSP1 OS=Encephalitozoon cuniculi GN=GSP1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.343e-18
Identity = 48/150 (32.00%), Postives = 80/150 (53.33%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIG-VEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATN 679
            +KI LIGD GVGK+  ++R     F     +T+G V      L  +G  +K  +WDTAGQE+   +   YY GA GA+  +D+T R T  N+ RW++E +    +   I++  NK D+ + + ++++    + + +   + E SA  A N
Sbjct:    8 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAIFFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHN 157          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASK_MSVKI (GTPase KRas OS=Kirsten murine sarcoma virus GN=K-RAS PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G SGVGKS +  +  +N F  E   TI   +  + + ++G+T    I DT GQE Y A+   Y R   G L V+ I   ++F+++  +  +L+   DS ++ +++ GNK DL   R V  +    LA   G+ F+ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGASGVGKSALTIQLIQNHFVDEYDPTIQDSYRKQVV-IDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQLKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 55/163 (33.74%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  230 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE-LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            L K++++G  GVGKS +  +F  +EF  + + T    +  + + ++G+ V+  I DTAGQE Y AI   Y+R   G L V+ IT  ++F     +  + LR   D +I  ++ GNK DLN  R V   +    A++  + ++ETSA    NV+K F  ++ EI
Sbjct:   11 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDLMREI 172          
The following BLAST results are available for this feature:
BLAST of CF834085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_PONAB2.343e-1833.77GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]
RAN_MOUSE2.343e-1833.77GTP-binding nuclear protein Ran OS=Mus musculus GN... [more]
RAN_MACFA2.343e-1833.77GTP-binding nuclear protein Ran OS=Macaca fascicul... [more]
RAN_HUMAN2.343e-1833.77GTP-binding nuclear protein Ran OS=Homo sapiens GN... [more]
RAN_CHICK2.343e-1833.77GTP-binding nuclear protein Ran OS=Gallus gallus G... [more]
RAN_CANFA2.343e-1833.77GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN2.343e-1833.77GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
GSP1_ENCCU2.343e-1832.00GTP-binding nuclear protein GSP1 OS=Encephalitozoo... [more]
RASK_MSVKI3.059e-1834.57GTPase KRas OS=Kirsten murine sarcoma virus GN=K-R... [more]
RALA_DROME3.059e-1833.74Ras-related protein Ral-a OS=Drosophila melanogast... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04O05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834085 ID=CF834085; Name=CF834085; organism=Citrus sinensis; type=EST; length=799bp
GGGGGGGCGGACCCCCCNANTTTTTTTTTTTTGTTGTTCCATTCTCTCTC
TCTCTCCCTCCCTCTCTCCCATTGGACAACAAACAACAATCCCCTTGCCC
AATTTCTCTTCCTCCAATCACCGTACCAGGACTCGCATTCTCTCTCGATC
TATCTGCCTTCAAAAGTTCTGTTTGAGAGAGATCGGAGAGGTTGTGATGG
CGAGTAGAGTGGATCACGAGTACGACTATCTGTTCAAGATCGTGTTGATC
GGCGACTCTGGCGTCGGGAAATCGAACATTCTTTCGAGGTTTACGAGGAA
TGAGTTTTGTTTGGAATCTAAATCAACCATCGGTGTTGAATTCGCCACCA
GGACTCTTCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACT
GCAGGCCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGC
AGTTGGTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACA
ATGTCCTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATT
GTCATAATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGT
TACCGAGGAGGATGGCCATTCTTTAGCTGAGAAGGAAGGTCTCTCATTTC
TTGAGACATCAGCTTTGGAAGCAACCAATGTTGAGAAGGCATTCCAGACC
ATTTTGACAGAGATTTACCACATCATAAGCAAAAAAGCATTAGCAGCCCA
ACAGGCATCTGCTAATACCGCTCTTCCTGGTCAAGGAACCACTATTAAT
back to top