CF834085

Overview
NameCF834085
Unique NameCF834085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASH_HUMAN (GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++   DS ++ +++ GNK DL   R V       LA   G+ ++ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 50/154 (32.47%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+VL+GD G GK+  + R    EF  +  +T+GVE            ++  +WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+   +   +    +   K+ L + + SA    N EK F
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLA-RVCENIPIVLCGNKVDVKDRKVKAKT--ITFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.901e-18
Identity = 50/163 (30.67%), Postives = 86/163 (52.76%), Query Frame = 2
Query:  230 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDL----NHLRAVTEEDGHSLAEKEGL----SFLETSALEATNVEKAF 694
            + KI+ +GDS VGK+++   +   E+      +IG ++  + L+VE K V   +WDT GQER++A +  Y+RGA    L +DI   ++F N+ +W+ E+  +   NI  ++ G KSD+      +     E      E +G+     + ETSA  + NV + +
Sbjct:    7 MLKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNVTELY 169          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASN_XENLA (GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 55/163 (33.74%), Postives = 89/163 (54.60%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEIY 718
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F ++  +  +++   DS ++ +++ GNK DL   R V  +    LA   G+ F+ETSA     VE AF T++ EI+
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINAYREQIKRVKDSDDVPMVLVGNKCDLPS-RTVDTKQAQELARSYGIPFIETSAKTRQGVEDAFYTLVREIH 164          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 54/163 (33.13%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLR-ELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE-ATNVEKAFQTILTEI 715
            +K+V++GD GVGKS +  +F +  F  +   TI   +   T +++ +     + DTAGQE + A+   Y R   G L+VY +T + +F++V R+ +  LR     +  +++  NK DL HLR VT + G  +A K  + ++ETSA +   NV+K F  ++  I
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 54/163 (33.13%), Postives = 91/163 (55.83%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLR-ELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALE-ATNVEKAFQTILTEI 715
            +K+V++GD GVGKS +  +F +  F  +   TI   +   T +++ +     + DTAGQE + A+   Y R   G L+VY +T + +F++V R+ +  LR     +  +++  NK DL HLR VT + G  +A K  + ++ETSA +   NV+K F  ++  I
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++  +  +++   DS ++ +++ GNK DL   R V  +    LA   G+ F+ETSA     V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASH_MSVNS (GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RAS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++   DS ++ +++ GNK DL   R V       LA   G+ ++ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++ ++  +++   DS ++ +++ GNK DL   R V       LA   G+ ++ETSA     VE AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-PARTVETRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 60/174 (34.48%), Postives = 92/174 (52.87%), Query Frame = 2
Query:  236 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVL-RWLRELRDHADSNIVIMMAGNKSDL--------NHLRAVT--EEDGHSLAEKEG-LSFLETSALEATNVEKAFQTILTEIYH 721
            K V +GD  VGK+ +L  +T N F  +   T+   F    L V+GKTV   +WDTAGQE Y  +    YRGA   +L + +  R +F+N+  +W+ ELR +A + + I++ G KSDL        N+  A T   E G  L ++ G L+++E S+    NV+  F   +  + H
Sbjct:   20 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVL-VDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELRHYAPT-VPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQMNVKAVFDEAIKVVLH 191          
The following BLAST results are available for this feature:
BLAST of CF834085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASH_HUMAN8.901e-1833.33GTPase HRas OS=Homo sapiens GN=HRAS PE=1 SV=1[more]
RAN_CAEEL8.901e-1832.47GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
RABL_DICDI8.901e-1830.67Ras-related protein RabL OS=Dictyostelium discoide... [more]
RASN_XENLA1.163e-1733.74GTPase NRas OS=Xenopus laevis GN=nras PE=2 SV=1[more]
RASM_RAT1.163e-1733.13Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE1.163e-1733.13Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RASK_MELGA1.163e-1733.33GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RASH_MSVNS1.163e-1733.33GTPase HRas OS=Murine sarcoma virus NS.C58 GN=H-RA... [more]
RASH_CHICK1.163e-1733.33GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]
RAC9_ARATH1.163e-1734.48Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834085 ID=CF834085; Name=CF834085; organism=Citrus sinensis; type=EST; length=799bp
GGGGGGGCGGACCCCCCNANTTTTTTTTTTTTGTTGTTCCATTCTCTCTC
TCTCTCCCTCCCTCTCTCCCATTGGACAACAAACAACAATCCCCTTGCCC
AATTTCTCTTCCTCCAATCACCGTACCAGGACTCGCATTCTCTCTCGATC
TATCTGCCTTCAAAAGTTCTGTTTGAGAGAGATCGGAGAGGTTGTGATGG
CGAGTAGAGTGGATCACGAGTACGACTATCTGTTCAAGATCGTGTTGATC
GGCGACTCTGGCGTCGGGAAATCGAACATTCTTTCGAGGTTTACGAGGAA
TGAGTTTTGTTTGGAATCTAAATCAACCATCGGTGTTGAATTCGCCACCA
GGACTCTTCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACT
GCAGGCCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGC
AGTTGGTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACA
ATGTCCTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATT
GTCATAATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGT
TACCGAGGAGGATGGCCATTCTTTAGCTGAGAAGGAAGGTCTCTCATTTC
TTGAGACATCAGCTTTGGAAGCAACCAATGTTGAGAAGGCATTCCAGACC
ATTTTGACAGAGATTTACCACATCATAAGCAAAAAAGCATTAGCAGCCCA
ACAGGCATCTGCTAATACCGCTCTTCCTGGTCAAGGAACCACTATTAAT
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