CF834085

Overview
NameCF834085
Unique NameCF834085
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAB7B_DICDI (Ras-related protein Rab-7B OS=Dictyostelium discoideum GN=rab7B PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.163e-17
Identity = 59/167 (35.33%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  230 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRW------LRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKE---GLSFLETSALEATNVEKAFQTI 703
            + K+V+IG+  VGK++IL R+    F +  K TIGV+F    + V    V  Q+WDT+GQER+R++  +YYRGA   +LV+D+T  +T  ++  W        E+RD      +I+  GNK D +  R VTE+      +      L++ +TSA +  N+E+ F+ I
Sbjct:    7 IIKVVIIGEKSVGKTSILRRYVDKRF-VTLKPTIGVDF----VMVSENMVTLQLWDTSGQERFRSLEISYYRGADYCILVFDVTNEKTLYDLKLWRDDFIEKTEIRDPILFPFIIL--GNKID-DPNRVVTEKAAIQWCKDNIGGNLTYFDTSAKDNINIEQVFKHI 165          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RSR1_CANAL (Ras-related protein RSR1 OS=Candida albicans GN=RSR1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 56/164 (34.15%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS+I  +F +  +      TI   +  + ++V+G+    +I DTAG  ++ A+   Y +   G LLVY +T   +   +L  LRE  LR     N+ +++ GNK DL   R ++ EDG  +++  GL  F ETSA+  TNV++AF  ++ +I
Sbjct:    4 YKVVVLGAGGVGKSSITVQFVQGVYVESYDPTIEDSYR-KQIEVDGRACDLEILDTAGVAQFTAMRELYIKSGKGFLLVYSVTDENSLKELLA-LREQVLRIKDSDNVPMVLVGNKCDLEDDRVLSIEDGVKVSQDWGLVPFYETSAMYKTNVDEAFIDVVRQI 165          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASK_RIVMA (GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++  +  +++   DS ++ +++ GNK DL   R V  +    LA   G+ F+ETSA     V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKYDL-PTRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 54/162 (33.33%), Postives = 89/162 (54.94%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADS-NIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +  +N F  E   TI   +  + + ++G+T    I DTAGQE Y A+   Y R   G L V+ I   ++F+++  +  +++   DS ++ +++ GNK DL   R V  +    LA   G+ F+ETSA     V+ AF T++ EI
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PTRTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREI 163          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 58/163 (35.58%), Postives = 92/163 (56.44%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +KIV++G  GVGKS +  +F +  F  +   TI   +  + ++V+G+    +I DTAG E++ A+   Y +   G +LVY IT + TF N L+ LRE  LR     ++ +++ GNK DL   R V +E G +LA +   +F+ETSA    NV   F  ++ +I
Sbjct:    4 YKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTF-NDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLVRQI 164          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 53/165 (32.12%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQT---FDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGL-SFLETSALEATNVEKAFQTILTEI 715
            +K+V++G SG GK+++  RF   +F      TI   +       +G+ +  +I DT+G ERY A+   Y R A   +LVY IT R +    +N+  ++ +++D   S I +++ GNK DL   R V  E+  +L +K G+  FLETSA    N++ A+  +  ++
Sbjct:    4 YKVVVLGASGTGKTSLTVRFVNGDFVETYDPTIEDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGIEDFLETSAKIDMNIQSAYDCLTLQL 168          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAP1_PHYPO (Ras-related protein Rap-1 OS=Physarum polycephalum GN=RAP1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 60/164 (36.59%), Postives = 90/164 (54.88%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRE--LRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATNVEKAFQTILTEI 715
            FKIV++G  GVGKS +  +F +  F  +   TI   +  + ++V+G+    +I DTAG E++ A+   Y +   G +LVY I    TF N L  LRE  LR     ++ +++ GNK DL   R ++ E G  LA K  G +FLE SA    NVE+ F  ++ +I
Sbjct:    6 FKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIIAMSTF-NDLPDLREQILRVKDCDDVPMVLVGNKCDLAEQRVISTEQGDELARKFGGCAFLEASAKNKINVEQIFYDLIRQI 167          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+V++GD G GK+  + R    EF  + + TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+ + +   ++   +   K+ L + E SA    N EK F
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 51/154 (33.12%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAF 694
            FK+V++GD G GK+  + R    EF  + + TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+ + +   ++   +   K+ L + E SA    N EK F
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164          
BLAST of CF834085 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.983e-17
Identity = 52/162 (32.10%), Postives = 87/162 (53.70%), Query Frame = 2
Query:  233 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLREL-RDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATNVEKAFQTILTEI 715
            +K+V++G  GVGKS +  +F  + F  +   TI   +  R ++++ +     I DTAGQ  + A+   Y R   G ++ Y IT R++F  V  + + + R     +  +++ GNKSDL  LR VT+E+G +LA +    F ETSA     ++  F  ++ EI
Sbjct:   22 YKLVMLGAGGVGKSAMTMQFISHRFPEDHDPTIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDLKQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREI 182          
The following BLAST results are available for this feature:
BLAST of CF834085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7B_DICDI1.163e-1735.33Ras-related protein Rab-7B OS=Dictyostelium discoi... [more]
RSR1_CANAL1.518e-1734.15Ras-related protein RSR1 OS=Candida albicans GN=RS... [more]
RASK_RIVMA1.518e-1733.33GTPase KRas OS=Rivulus marmoratus GN=kras PE=2 SV=... [more]
RASK_ORYLA1.518e-1733.33GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RAS3_DROME1.518e-1735.58Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RAPC_DICDI1.518e-1732.12Ras-related protein rapC OS=Dictyostelium discoide... [more]
RAP1_PHYPO1.518e-1736.59Ras-related protein Rap-1 OS=Physarum polycephalum... [more]
RAN2_ORYSJ1.518e-1733.12GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI1.518e-1733.12GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RIT1_HUMAN1.983e-1732.10GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834085 ID=CF834085; Name=CF834085; organism=Citrus sinensis; type=EST; length=799bp
GGGGGGGCGGACCCCCCNANTTTTTTTTTTTTGTTGTTCCATTCTCTCTC
TCTCTCCCTCCCTCTCTCCCATTGGACAACAAACAACAATCCCCTTGCCC
AATTTCTCTTCCTCCAATCACCGTACCAGGACTCGCATTCTCTCTCGATC
TATCTGCCTTCAAAAGTTCTGTTTGAGAGAGATCGGAGAGGTTGTGATGG
CGAGTAGAGTGGATCACGAGTACGACTATCTGTTCAAGATCGTGTTGATC
GGCGACTCTGGCGTCGGGAAATCGAACATTCTTTCGAGGTTTACGAGGAA
TGAGTTTTGTTTGGAATCTAAATCAACCATCGGTGTTGAATTCGCCACCA
GGACTCTTCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACT
GCAGGCCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGC
AGTTGGTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACA
ATGTCCTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATT
GTCATAATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGT
TACCGAGGAGGATGGCCATTCTTTAGCTGAGAAGGAAGGTCTCTCATTTC
TTGAGACATCAGCTTTGGAAGCAACCAATGTTGAGAAGGCATTCCAGACC
ATTTTGACAGAGATTTACCACATCATAAGCAAAAAAGCATTAGCAGCCCA
ACAGGCATCTGCTAATACCGCTCTTCCTGGTCAAGGAACCACTATTAAT
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