CF834086

Overview
NameCF834086
Unique NameCF834086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 3.090e-79
Identity = 147/183 (80.33%), Postives = 161/183 (87.98%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMV-AQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E+ AYRKIRLRAEDVQG+NVLT FWGM FTTDKLRSLV+KW TLIE++VDVKTTDN+TLRLFCI FTKR  NQVKRTCYAQ+SQIRQIR KMREIM+  +A+SCDLK LV KFI E IG++IEKAT  IYPLQN
Sbjct:   28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQN 210          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 3.909e-74
Identity = 135/182 (74.18%), Postives = 153/182 (84.07%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAP+ F VRNVGKTLVTRTQGTKIASE LK RVFEVSL DL   E+ A+RK+RLR EDVQG+N LTNFWGM FTTDKLRSLVRKW TLIEA+VDVKTTD +TLR+FCI FTK+   Q+KRTCYAQ++QIRQIR+KM EI+  +A SCDLK LV KFI E IG++IEK+   IYPLQN
Sbjct:   28 DWYDIKAPTMFTVRNVGKTLVTRTQGTKIASEALKGRVFEVSLADLQKNEDDAFRKMRLRVEDVQGRNCLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQGQIKRTCYAQSAQIRQIRKKMMEIITREATSCDLKELVAKFIPESIGKDIEKSCQGIYPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_OSTLU (40S ribosomal protein S3a OS=Ostreococcus lucimarinus (strain CCE9901) GN=OSTLU_28528 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.151e-72
Identity = 129/182 (70.88%), Postives = 156/182 (85.71%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F VRN+GKTLV+RTQGTKIAS+GLK R+FE+SL DL N+E+ ++RK++L+ EDVQGKNVLTNF GM FTTDK+RSLVRKW +LIE +VDVKTTD +TLR+FCIGFTKR  +Q KRTCYAQ++QIR+IR KM EI+  +  +CDLK LV KFI EVIG+EIEK+ + IYPLQN
Sbjct:   28 DWYDIKAPSMFSVRNIGKTLVSRTQGTKIASDGLKGRIFEISLADLNNDEDQSFRKMKLKCEDVQGKNVLTNFAGMDFTTDKIRSLVRKWFSLIECFVDVKTTDGYTLRVFCIGFTKRRMDQAKRTCYAQSAQIRKIRAKMVEIITRECTTCDLKELVLKFIPEVIGKEIEKSCAGIYPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.629e-70
Identity = 129/182 (70.88%), Postives = 152/182 (83.52%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F VRNVGKTLV R+QG K A++ LK R+ EVSLGDL  EEE ++RKI+LR ++VQGKN LTNF GM FT+DKLRSLVRKW TLIEA+VDVKTTD + LRLF IGFTKR P QV++T YAQ+SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA+ SIYPLQN
Sbjct:   28 DWYDIKAPSIFDVRNVGKTLVNRSQGLKNANDSLKGRIIEVSLGDLNKEEEQSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKASRSIYPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_POSPM (40S ribosomal protein S1 OS=Postia placenta (strain ATCC 44394 / Madison 698-R) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 8.435e-69
Identity = 129/182 (70.88%), Postives = 150/182 (82.42%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F  RNVGKTLV R+ G K A++ LK R+ E+SL DL N+EE A+RKI+LR ++VQGKN LTNF GMSF++DKLRSLVRKW TLIEA+VDVKTTD + LRLF IGFTKR P QV++T YAQ+SQIRQIR+KM EIM  +A+SCDLK LV+KFI E IGREIEKA   IYPLQN
Sbjct:   28 DWYDIKAPSIFEKRNVGKTLVNRSSGLKNANDSLKGRIVEISLADLNNDEEQAFRKIKLRIDEVQGKNCLTNFHGMSFSSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQVRKTTYAQSSQIRQIRQKMFEIMTREASSCDLKELVQKFIPEAIGREIEKAARGIYPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.205e-68
Identity = 124/182 (68.13%), Postives = 150/182 (82.42%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F VRNVGKTL  R+QG K A++ LK R+ EVSL DL  +EE ++RKI+LR +++QGKN LTNF GM FT+DKLRSLVRKW TL+EA+VDVKTTD + LRLF IGFTKR P+QV++T YAQ+SQ+R+IR+KM EIM  +A +CDLK LV+KF+ E IGREIEKA  SIYPLQN
Sbjct:   28 DWYDIKAPSIFEVRNVGKTLANRSQGLKNANDSLKGRIIEVSLADLNKDEEQSFRKIKLRIDEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPSQVRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFVPEAIGREIEKAARSIYPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_COPC7 (40S ribosomal protein S1 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.326e-68
Identity = 122/182 (67.03%), Postives = 150/182 (82.42%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F  RNVGKTLV R+QG K A++ L+ R+ EVSL DL  +EE ++RKI+LR +++QG+N LTNF GM FT+DKLRSLVRKW TL+EA+VDVKTTD + LRLF IGFTKR P QVK+T YAQT+Q+R++R+KM EI+  +A SCDLK LV+KF+ E IGREIEKA+ SIYPLQN
Sbjct:   28 DWYDIKAPSIFETRNVGKTLVNRSQGLKNANDSLRGRIIEVSLADLNKDEEQSFRKIKLRVDEIQGRNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPTQVKKTTYAQTAQVRELRKKMFEIITREATSCDLKELVQKFVPEAIGREIEKASRSIYPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_PYRTR (40S ribosomal protein S1 OS=Pyrenophora tritici-repentis (strain Pt-1C-BFP) GN=rps1 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.297e-66
Identity = 125/182 (68.68%), Postives = 146/182 (80.22%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWY+IKAP  F VR+VGKTLV RT G K A++ LK R+FEVSL DL  +E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLFCI FTKR PNQVK+T YAQ+SQIR IR+KM EIM   A+SC L  L +K I EVIGREIEKAT  IYPLQN
Sbjct:   27 DWYNIKAPGTFAVRDVGKTLVNRTTGLKNANDALKGRIFEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVVVKTTDDYLLRLFCIAFTKRRPNQVKKTTYAQSSQIRAIRKKMVEIMARDASSCTLAQLTQKLIPEVIGREIEKATQGIYPLQN 208          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_ASPCL (40S ribosomal protein S1 OS=Aspergillus clavatus GN=rps1 PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 7.389e-65
Identity = 121/182 (66.48%), Postives = 146/182 (80.22%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR +++QGKN LTNF G+ FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVIGREIEKAT  IYPLQN
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEIQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMTEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_NEOFI (40S ribosomal protein S1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rps1 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 9.651e-65
Identity = 122/182 (67.03%), Postives = 146/182 (80.22%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            D Y +KAPS F++R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+ FTTDKLRSLVRKW +LIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+KM EIM  +AASC L  L  K I EVIGREIEKAT  IYPLQN
Sbjct:   28 DEYSVKAPSTFQIRDVGKTLVNRTSGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTTDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKMIEIMQREAASCSLAQLTHKLIPEVIGREIEKATQGIYPLQN 209          
The following BLAST results are available for this feature:
BLAST of CF834086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
RS3A_BRARA3.090e-7980.3340S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_CHLRE3.909e-7474.1840S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A_OSTLU8.151e-7270.8840S ribosomal protein S3a OS=Ostreococcus lucimari... [more]
RS3A_LENED7.629e-7070.8840S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_POSPM8.435e-6970.8840S ribosomal protein S1 OS=Postia placenta (strai... [more]
RS3A_LACBS3.205e-6868.1340S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_COPC79.326e-6867.0340S ribosomal protein S1 OS=Coprinopsis cinerea (s... [more]
RS3A_PYRTR2.297e-6668.6840S ribosomal protein S1 OS=Pyrenophora tritici-re... [more]
RS3A_ASPCL7.389e-6566.4840S ribosomal protein S1 OS=Aspergillus clavatus G... [more]
RS3A_NEOFI9.651e-6567.0340S ribosomal protein S1 OS=Neosartorya fischeri (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834086 ID=CF834086; Name=CF834086; organism=Citrus sinensis; type=EST; length=682bp
CGAGCTAGGACTCCTTTACAGCGGAGCCGTCTCTTGAGCAGCAGCTGCAC
AAACCTGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAG
GCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATC
AAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTAC
CCGGACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGT
TTGAGGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGG
AAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAA
CTTCTGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGA
AGTGGCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAAC
TTCACATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCA
GGTTAAGAGGACTTGCTATGCACAGACCAGCCAGATTAGACAGATTCGCC
GCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAG
AGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAA
GGCAACCTCAAGCATATATCCCTTACAAAATG
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