CF834086

Overview
NameCF834086
Unique NameCF834086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_DROER (40S ribosomal protein S3a OS=Drosophila erecta GN=RpS3A PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.466e-52
Identity = 101/184 (54.89%), Postives = 131/184 (71.20%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM  TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHD 212          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_DROSE (40S ribosomal protein S3a OS=Drosophila sechellia GN=RpS3A PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.220e-52
Identity = 101/184 (54.89%), Postives = 131/184 (71.20%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM  TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHD 212          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_DROMO (40S ribosomal protein S3a OS=Drosophila mojavensis GN=RpS3A PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.206e-52
Identity = 101/184 (54.89%), Postives = 131/184 (71.20%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM  TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTFKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHD 212          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_DROWI (40S ribosomal protein S3a OS=Drosophila willistoni GN=RpS3A PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.493e-52
Identity = 101/184 (54.89%), Postives = 131/184 (71.20%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM  TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHD 212          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_DROAN (40S ribosomal protein S3a OS=Drosophila ananassae GN=RpS3A PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 7.174e-52
Identity = 101/184 (54.89%), Postives = 131/184 (71.20%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAP+ F+ R +GKTLV RTQG +IAS+ LK RVFEVSL DL  +   E ++RK RL AEDVQ +NVL NF GM  TTDK RS+V+KW TLIEA V+ KT D + LR+FCIGFT +     ++TCYAQ SQ+R+IR +M +I+  + +  DLK LV K   + I ++IEK+   IYPL +
Sbjct:   29 DWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPERSFRKFRLIAEDVQDRNVLCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTIDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIINNEVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHD 212          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_TAESO (40S ribosomal protein S3a OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.696e-49
Identity = 95/180 (52.78%), Postives = 132/180 (73.33%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPL 675
            +WY+++APS F  R   +TL+TRTQGTKIASEGLK RV ++SLGDL ++ +  +RK +L+ EDVQG++ LTNF GM  T DKL  +V KW + IEA+VDVKTTD +TLR F I FTK+  +Q K   YAQT++I+++R K+ E++  + A CDLKS+V+K I + IG++     SSI+PL
Sbjct:   28 EWYELRAPSMFSNRTCARTLITRTQGTKIASEGLKGRVIQLSLGDLSDKTQDIFRKFKLQVEDVQGRHCLTNFHGMDLTRDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFTKKQEDQ-KSHAYAQTTRIKKLRAKIVEVVQREVARCDLKSVVQKLIPDSIGQDAMNEASSIFPL 206          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJA (40S ribosomal protein S3a OS=Schistosoma japonicum GN=SJCHGC01275 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 94/180 (52.22%), Postives = 126/180 (70.00%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPL 675
            +WYDIKAP+ F  R   +TLVTRTQGT+IASE LK RV  +SLGDL  + E  +RK +L+ EDVQG++ LTNF G+  T DKL S+V KW + IEA+VDVKTTD + LR F I FT  +P   +   YAQT++I++IR ++ EI+  + ++CDLK +V K I + I ++  KA S IYPL
Sbjct:   29 EWYDIKAPAMFPKRTCARTLVTRTQGTRIASEALKGRVVTLSLGDLSEKNEEVFRKFKLQIEDVQGRHCLTNFHGLELTRDKLCSVVVKWRSTIEAHVDVKTTDGYLLRFFIITFTPSVPRSERLHSYAQTTRIKRIRARLVEIIQQEVSTCDLKEVVNKLIPDSIAQDARKAASWIYPL 208          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_DICDI (40S ribosomal protein S3a OS=Dictyostelium discoideum GN=rps3a PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 97/200 (48.50%), Postives = 136/200 (68.00%), Query Frame = 1
Query:  136 DWYDIKAPSCF----RVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFI--------------AEVIGREIEKATSSIYPLQN 681
            +WY ++AP+ F        VG T V RTQGTK+AS+GLK RV+EVSL D+ ++E   +RKI+LRAE+V+G+NVLTNF+GM  T+DKLRSL+ KW TLIE +VDVKTTD + LR+F I FTK+  +Q K+T YA+TS+++ IR+KM +I+    +S DLK++V+  I              A  +  +I    SSI+P+ N
Sbjct:   23 EWYVVRAPTQFFKSPADNKVGFTPVNRTQGTKLASDGLKGRVYEVSLADMKDDESQVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDYLIGVSLNGVTTNASGFAPTLAEKIRIEGSSIFPIHN 222          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.083e-39
Identity = 81/186 (43.55%), Postives = 120/186 (64.52%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRL---PNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            +WYD +AP  F  ++ GKTLVT++ G +IASE +K RV E +L DL  N  + A+RK++L  ++V G+N  T+F+G+  T D+L S++RKW TLIEA VD KT D + +R+F + FTK+          TCYA++SQ+R IRRK+   +  +AA   +    +  I E   ++IEK T +I+PLQN
Sbjct:   30 EWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETKNIFPLQN 215          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_LEIBR (40S ribosomal protein S3a OS=Leishmania braziliensis GN=LbrM34_V2.0430 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.235e-36
Identity = 74/183 (40.44%), Postives = 113/183 (61.75%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQ 678
            +WYD+ APS F  R   KT+  +TQGT+IA++ L+ RVFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V+V+T D +T+RLF + FTK   NQ  R CYA+   ++ +R ++ +++  + +   +K  V      V+   + +  + I PL+
Sbjct:   29 EWYDVVAPSNFEKRQFSKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEMTTDKMASLLRKWCTTMETTVEVRTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRVTKMIKRRLSKVQIKEAVSLLTRNVLSDALVRRCNPIVPLR 211          
The following BLAST results are available for this feature:
BLAST of CF834086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
RS3A_DROER2.466e-5254.8940S ribosomal protein S3a OS=Drosophila erecta GN=... [more]
RS3A_DROSE3.220e-5254.8940S ribosomal protein S3a OS=Drosophila sechellia ... [more]
RS3A_DROMO4.206e-5254.8940S ribosomal protein S3a OS=Drosophila mojavensis... [more]
RS3A_DROWI5.493e-5254.8940S ribosomal protein S3a OS=Drosophila willistoni... [more]
RS3A_DROAN7.174e-5254.8940S ribosomal protein S3a OS=Drosophila ananassae ... [more]
RS3A_TAESO9.696e-4952.7840S ribosomal protein S3a OS=Taenia solium PE=2 SV... [more]
RS3A_SCHJA3.119e-4752.2240S ribosomal protein S3a OS=Schistosoma japonicum... [more]
RS3A_DICDI4.504e-4648.5040S ribosomal protein S3a OS=Dictyostelium discoid... [more]
RS3A_TETTH4.083e-3943.5540S ribosomal protein S3a OS=Tetrahymena thermophi... [more]
RS3A_LEIBR3.235e-3640.4440S ribosomal protein S3a OS=Leishmania braziliens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834086 ID=CF834086; Name=CF834086; organism=Citrus sinensis; type=EST; length=682bp
CGAGCTAGGACTCCTTTACAGCGGAGCCGTCTCTTGAGCAGCAGCTGCAC
AAACCTGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAG
GCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATC
AAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTAC
CCGGACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGT
TTGAGGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGG
AAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAA
CTTCTGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGA
AGTGGCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAAC
TTCACATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCA
GGTTAAGAGGACTTGCTATGCACAGACCAGCCAGATTAGACAGATTCGCC
GCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAG
AGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAA
GGCAACCTCAAGCATATATCCCTTACAAAATG
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