CF834086
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 46/180 (25.56%), Postives = 87/180 (48.33%), Query Frame = 1 Query: 139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQ 678 W+ + APS +G + ++ + L R EVSL D+ + H K+R + V G +T F G+ T D +RSLVRK + + A V+VKT D + +R+ + T T ++Q +R++M +++ +A+ D+ +++ + ++ ++ A I PL+ Sbjct: 27 WFSVYAPSY-----LGGVFLAEVPASE--PQKLLLRTLEVSLFDITKDLSHLPIKLRFQIHKVDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAIT---------THRIGSAQKSAMRKRMFDVLTRKASEMDIGQFLKEVLEGLLTADLFVAGKKIAPLR 190
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_HALWD (30S ribosomal protein S3Ae OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 51/180 (28.33%), Postives = 79/180 (43.89%), Query Frame = 1 Query: 139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQ 678 WY I AP F +G T E + R EV+LGD+ ++ K+ + DV T F D LRSL+R+ + I+A + V+TTD++ ++L + FT T A SQ + IRR M +++ A L++ I + I +IYPL+ Sbjct: 15 WYSIIAPEQFDRSELGSTFADDP-------EKIHGRTLEVTLGDITGDQGENNTKLTFKVNDVTSDAAYTEFIKHELARDYLRSLIRRGASKIDAAITVRTTDDYRVQLQPVAFT---------TKKADRSQEQAIRRVMIDLVEDAADERTFADLIDAAIEGQLSSAIYGEAKTIYPLR 178
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_METVS (30S ribosomal protein S3Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 48/180 (26.67%), Postives = 79/180 (43.89%), Query Frame = 1 Query: 139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQ 678 WY+I P F +G+T L R+ E+SL DL NE ++ + + V G N +T F G T + L+S +R+ + I +DV+T D F +R+ + T V+ Y +T +IR KM +I+ A V + +G +I ++PL+ Sbjct: 24 WYNIYTPQSFGGDVIGQTPANDPSA-------LMGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNAITQFVGHDTTREYLKSQIRRRRSKINVIIDVRTKDGFKVRVKALVLT-----AVRARDYHKT----EIRVKMEQIIKEMANETAFAEFVHAMVMGGVGSKIYSECKKMFPLK 187
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_NATPD (30S ribosomal protein S3Ae OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 47/180 (26.11%), Postives = 80/180 (44.44%), Query Frame = 1 Query: 139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQ 678 WY + AP F +G+T E + R + +LG+L N+ K+ + DV T+F T D LRSL R+ + ++A+V V TTD++ +++ + +T T A SQ + IR M +++ AA L++ + + I +IYPL+ Sbjct: 15 WYTVMAPEIFDRAELGETPADEP-------EQVYDRTVQTTLGELQNDPSENNTKLTFQISDVGSDTAYTDFVQHELTRDYLRSLTRRGTSKVDAFVTVLTTDDYRVQVQPVAYT---------TKSADRSQEQAIRSTMVDLVEESAADNTFADLIDSIVEGRLSSAIYNEAKTIYPLR 178
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_METS3 (30S ribosomal protein S3Ae OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 48/180 (26.67%), Postives = 84/180 (46.67%), Query Frame = 1 Query: 139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQ 678 WY IK P F + +G+T + L R EV++ +L + Y K+R ++V G T F G TTD +RS++R+ + I+A VKT D+ ++L + T R A++SQ + +R+ + +++ AA L++ + + E+ IYPL+ Sbjct: 19 WYTIKTPVNFEDKEIGETPARDP-------DYLIGRGVEVTMRELSGDFSKQYIKLRFEIDNVAGDVANTKFTGHKTTTDYVRSMIRRGTSRIDASSVVKTKDDRKVKLHVLAVTTR---------RAKSSQQKYMRQVINDLLAETAAEKSFDELIKLVVNGKLASEVYHNAKKIYPLK 182
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_METM7 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 51/180 (28.33%), Postives = 79/180 (43.89%), Query Frame = 1 Query: 139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQ 678 WYDI P F G ++ +T A+ L R+ E+SL DL NE ++ + + V G N + F G T + L+S VR+ + I A VDV+T D F LR+ + T A+ +IR KM +I+ A V + +G +I ++PL+ Sbjct: 24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLK 187
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_METM6 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11 Identity = 51/180 (28.33%), Postives = 79/180 (43.89%), Query Frame = 1 Query: 139 WYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQ 678 WYDI P F G ++ +T A+ L R+ E+SL DL NE ++ + + V G N + F G T + L+S VR+ + I A VDV+T D F LR+ + T A+ +IR KM +I+ A V + +G +I ++PL+ Sbjct: 24 WYDIYTPQSF-----GGDVIGQTPANDPAT--LIGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPLK 187 The following BLAST results are available for this feature:
BLAST of CF834086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 187
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834086 ID=CF834086; Name=CF834086; organism=Citrus sinensis; type=EST; length=682bpback to top |