CF834086

Overview
NameCF834086
Unique NameCF834086
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_TRIAD (40S ribosomal protein S3a OS=Trichoplax adhaerens GN=TRIADDRAFT_36460 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.442e-60
Identity = 115/182 (63.19%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAPS F VRN+GKTLV RT GTKIAS+GLK RVFEVSL DL N E  A+RK RL AE+V GK+VLTNF GMS T+DKL+SLV+KW TLIEA++D KTTD + LR F IGFTK+ PNQ+K+T YA+TSQ R IR+KM +I+  + ++ DLK +V + I + IG++IEK+  SIYPL +
Sbjct:   28 DWYDVKAPSQFAVRNIGKTLVNRTSGTKIASDGLKGRVFEVSLADLQNGEI-AFRKFRLIAEEVLGKSVLTNFHGMSMTSDKLKSLVKKWQTLIEAHIDAKTTDGYLLRFFAIGFTKKRPNQIKKTAYAKTSQCRSIRKKMTDIITREVSAIDLKEVVNRLIPDSIGKDIEKSCQSIYPLHD 208          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A2_SCHPO (40S ribosomal protein S1-B OS=Schizosaccharomyces pombe GN=rps102 PE=1 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.442e-60
Identity = 113/182 (62.09%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            +WYDIKAP+ F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEHA+RK++LR ED+QGK+ LT+F G+S T+DKLRSLVRKW T IEA   +KTTD +  R+F IGFT+R  NQVK+T YAQ+SQIR IR+KM +++  Q +SC ++ LV+K I EVIGREIE+AT SI+PLQN
Sbjct:   28 EWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_PERAM (40S ribosomal protein S3a OS=Periplaneta americana GN=Parcxpwex01 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.213e-60
Identity = 115/184 (62.50%), Postives = 139/184 (75.54%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYD+KAPS F  R +GKTLV RTQGTKIASEGLK+RVFEVSL DL N+   E ++RK RL AEDVQG+NVLTNF GM  TTDKLRS+V+KW TLIEA VDVKTTD + LR+FCIGFT +     ++TCYAQ +Q+R IR+KM EI+     S DLK +V K + + I ++IEKA   IYPL +
Sbjct:   29 DWYDVKAPSMFATRQIGKTLVNRTQGTKIASEGLKYRVFEVSLADLQNDNDAERSFRKFRLIAEDVQGRNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRVFCIGFTNKDQMSQRKTCYAQHTQVRAIRKKMVEIITRDVTSSDLKEVVNKLLPDSIAKDIEKACQGIYPLHD 212          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_NANOT (40S ribosomal protein S1 OS=Nannizzia otae (strain CBS 113480) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.213e-60
Identity = 118/182 (64.84%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            D Y +KAP+ F+VR+VGKTLV RT G K A++ LK RVFEVSL DL  +E H++RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ +RLF I FTKR PNQ+K+T YAQ+SQIR IR+KM EI+  QA+SC L  L  K + EVIGREIEK+T  IYPLQN
Sbjct:   28 DEYLVKAPTTFQVRDVGKTLVNRTTGLKNANDYLKGRVFEVSLADLQKDEAHSFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLVRLFAIAFTKRRPNQIKKTTYAQSSQIRAIRKKMTEIIQRQASSCTLTQLT-KLVPEVIGREIEKSTQGIYPLQN 208          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_SCHJY (40S ribosomal protein S1 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=rps1 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.196e-60
Identity = 113/182 (62.09%), Postives = 140/182 (76.92%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DWYDIKAPS F V+NVGKTLV RT G K A++ LK R+ EVSL DL  +EEH++RK++LR +DVQGK  LT F GMS T+DKLRSLVRKW T IEA   +KTTD +  R+F IGFT+R  NQ+K+T YAQ+SQIR IR+KM +++  QA  C ++ LV+K I E+IGREIEKAT  I+PLQN
Sbjct:   28 DWYDIKAPSFFEVKNVGKTLVNRTAGLKNANDALKGRIVEVSLADLQKDEEHSFRKVKLRVDDVQGKACLTTFNGMSMTSDKLRSLVRKWQTTIEADQTIKTTDGYVCRIFVIGFTRRRYNQIKKTTYAQSSQIRAIRQKMFQVIQNQATGCSMRELVQKLIPEIIGREIEKATGGIFPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_AJECN (40S ribosomal protein S1 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 4.196e-60
Identity = 118/182 (64.84%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            D Y +KAPS F VR+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A+S  L  L  K I EVIGREIEK+T  IYPLQN
Sbjct:   28 DEYSVKAPSTFAVRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASSRTLAQLT-KLIPEVIGREIEKSTHGIYPLQN 208          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDS (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.480e-60
Identity = 117/182 (64.29%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I EVIGREIEKAT  IYPLQN
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQN 208          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_AJEDR (40S ribosomal protein S1 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.480e-60
Identity = 117/182 (64.29%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            D Y +KAPS F +R+VGKTLV RT G K A++ LK R+FEVSL DL N+E+HA+RK++LR ++VQGKN LTNF G+ FT+DKLRSLVRKW TLIEA V VKTTD++ LRLF I FTKR PNQ+K+T YA++SQIR IR+K+ EI+  +A++  L  L  K I EVIGREIEKAT  IYPLQN
Sbjct:   28 DEYSVKAPSTFAIRDVGKTLVNRTTGLKNANDSLKGRIFEVSLADLQNDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVKTTDDYLLRLFAIAFTKRRPNQIKKTTYARSSQIRAIRKKITEIIQREASTRTLAQLT-KLIPEVIGREIEKATHGIYPLQN 208          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 5.480e-60
Identity = 111/182 (60.99%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            DW+DIKAPS F  RNVGKTL+ R+ G K A++GLK RV EVSL DL   E+H+YRKI+LR ++VQGKN+LTNF G+ FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T +I+PLQN
Sbjct:   28 DWFDIKAPSTFENRNVGKTLINRSTGLKNAADGLKGRVVEVSLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQN 209          
BLAST of CF834086 vs. ExPASy Swiss-Prot
Match: RS3A_MALGO (40S ribosomal protein S1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 9.348e-60
Identity = 110/182 (60.44%), Postives = 144/182 (79.12%), Query Frame = 1
Query:  136 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQN 681
            +WYDIKAP  F  RNVGKT+V R+QG K AS+ LK R+ E SL DL  ++E AYRK +LR ++VQG+N LTNF+GMSFT+DKLRSLVRKW +LIEA+ D++TTD + LR+F IGFT+R  NQVK+T YA++SQI  IR+KM E++  +++SCDL+  V K I EV+GREIEK+T  IYPL++
Sbjct:   27 EWYDIKAPVFFENRNVGKTIVNRSQGLKNASDALKGRILEQSLADLNKDDEQAYRKFQLRVDEVQGRNCLTNFYGMSFTSDKLRSLVRKWQSLIEAHQDIRTTDGYLLRVFAIGFTRRRANQVKKTTYAKSSQIHAIRKKMFEVIQRESSSCDLREFVAKLIPEVMGREIEKSTQGIYPLKD 208          
The following BLAST results are available for this feature:
BLAST of CF834086 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
RS3A_TRIAD1.442e-6063.1940S ribosomal protein S3a OS=Trichoplax adhaerens ... [more]
RS3A2_SCHPO1.442e-6062.0940S ribosomal protein S1-B OS=Schizosaccharomyces ... [more]
RS3A_PERAM3.213e-6062.5040S ribosomal protein S3a OS=Periplaneta americana... [more]
RS3A_NANOT3.213e-6064.8440S ribosomal protein S1 OS=Nannizzia otae (strain... [more]
RS3A_SCHJY4.196e-6062.0940S ribosomal protein S1 OS=Schizosaccharomyces ja... [more]
RS3A_AJECN4.196e-6064.8440S ribosomal protein S1 OS=Ajellomyces capsulata ... [more]
RS3A_AJEDS5.480e-6064.2940S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A_AJEDR5.480e-6064.2940S ribosomal protein S1 OS=Ajellomyces dermatitid... [more]
RS3A2_PICST5.480e-6060.9940S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A_MALGO9.348e-6060.4440S ribosomal protein S1 OS=Malassezia globosa (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_04O06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834086 ID=CF834086; Name=CF834086; organism=Citrus sinensis; type=EST; length=682bp
CGAGCTAGGACTCCTTTACAGCGGAGCCGTCTCTTGAGCAGCAGCTGCAC
AAACCTGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGGAAGAAAGGAG
GCAAGAAGAAGGCTGCTGATCCGTTTGCCAAGAAGGACTGGTATGATATC
AAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAAGACTCTTGTTAC
CCGGACTCAGGGTACCAAGATTGCATCAGAAGGACTCAAACACAGAGTGT
TTGAGGTATCACTAGGTGATCTTCTCAACGAAGAAGAGCACGCTTACAGG
AAGATCAGACTGAGAGCTGAAGATGTCCAAGGGAAGAATGTGTTGACTAA
CTTCTGGGGCATGAGTTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGA
AGTGGCATACCTTGATTGAAGCTTATGTGGATGTCAAGACCACTGATAAC
TTCACATTGAGATTGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCA
GGTTAAGAGGACTTGCTATGCACAGACCAGCCAGATTAGACAGATTCGCC
GCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAG
AGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAA
GGCAACCTCAAGCATATATCCCTTACAAAATG
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