CF834106

Overview
NameCF834106
Unique NameCF834106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CFI2_ARATH (Chalcone--flavonone isomerase 2 OS=Arabidopsis thaliana GN=CHI2 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.194e-57
Identity = 123/196 (62.76%), Postives = 143/196 (72.96%), Query Frame = -3
Query:  255 VQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLN 839
            V+ P S K  FLGGAG        KFV  T IGVYLE  A+P ++ KWKGK A+ELTESV FFR +VTG FEK  +VTM   LTG QYSEKV ENC  I K  G YT +EAKAI++F  VFK++ FPPGSSI+F   P GSLTI+FSK+  +PK G AVI++ LL EAVLESMIGKNGVSPA +KSLAERLS L+N
Sbjct:   20 VESPASHKRLFLGGAG--------KFVIVTVIGVYLEAMALPSISAKWKGKNAKELTESVPFFRQLVTGEFEKLARVTMKKRLTGIQYSEKVVENCEEIMKASGKYTRSEAKAIDQFLMVFKNQDFPPGSSIIFAICPKGSLTIAFSKEERVPKTGKAVIKNKLLGEAVLESMIGKNGVSPATRKSLAERLSKLMN 207          
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CFI1_LOTJA (Chalcone--flavonone isomerase 1 OS=Lotus japonicus GN=CHI1 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 6.194e-57
Identity = 111/196 (56.63%), Postives = 145/196 (73.98%), Query Frame = -3
Query:  255 VQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQS-PGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLN 839
            V  P + KS+FLGGAGERGL IEGKF+KFT IGVYLED AV  LA KWKGK+++EL +S++FFRD+++ P EK ++ + + PL+G +YS KV ENC+A  K  G Y +AEA AIEKF E F+   FPPGSS+ + QS  G L +SFS D +IP++   VIE+  LSEAVLE+MIG++ VSP  K+ LAERL  ++N
Sbjct:   23 VTSPATAKSYFLGGAGERGLTIEGKFIKFTGIGVYLEDTAVDSLATKWKGKSSQELQDSLDFFRDIISSPSEKLIRGSKLRPLSGVEYSRKVMENCVAHMKSAGTYGEAEATAIEKFAEAFRKVDFPPGSSVFYRQSTDGKLGLSFSLDDTIPEEEAVVIENKALSEAVLETMIGEHAVSPDLKRCLAERLPIVMN 218          
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CFI2_MEDSA (Chalcone--flavonone isomerase 2 (Fragment) OS=Medicago sativa GN=CHI2 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 8.090e-57
Identity = 112/189 (59.26%), Postives = 144/189 (76.19%), Query Frame = -3
Query:  255 KSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLN 818
            KS+FLGGAGERGL IEG F+KFTAIGVYLED AV  LA KWKGK++EEL E+++F+RD+++GPFEK ++ + I  L+G +YS KV ENC+A  K  G Y DAEA+A++KF E FK   FPPG+S+ + QSP G L +SFS D SIP+   A+IE+  +S AVLE+MIG++ VSP  K+ LA RL ALLN
Sbjct:    1 KSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLN 189          
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CFI3_LOTJA (Chalcone--flavonone isomerase 3 OS=Lotus japonicus GN=CHI3 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.354e-56
Identity = 108/196 (55.10%), Postives = 145/196 (73.98%), Query Frame = -3
Query:  255 VQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLN 839
            +  P + KS+FLGGAGERGL IEGKF+KFT +GVYLED  V  LA KWKGK+++EL +S++F+RD+++ P EK ++ + + PL+G +YS KV ENC+A  K  G Y +AEA AI KF E F++  FPPGSS+ + QSP G L +SFS D ++P+    VIE+  LSEAVLE+MIG++ VSP  K+ LAERL A+LN
Sbjct:   22 ITSPATAKSYFLGGAGERGLTIEGKFIKFTGLGVYLEDKTVDSLATKWKGKSSQELLDSLDFYRDIISSPSEKLIRGSKLRPLSGVEYSRKVMENCVAHMKSTGTYGEAEAAAIGKFAEAFRNLDFPPGSSVFYRQSPDGELGLSFSPDDTLPEKEAVVIENKALSEAVLETMIGEHAVSPDLKRCLAERLPAVLN 217          
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CF1B1_SOYBN (Chalcone--flavonone isomerase 1B-1 OS=Glycine max GN=CHI1B1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.074e-56
Identity = 111/190 (58.42%), Postives = 144/190 (75.79%), Query Frame = -3
Query:  273 VQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAER 839
            V PPGSTKS+FLGGAG RGL I+ +FVKFT IGVYLED AV  LA KWKGK+A EL +S++F+RD++ GPFEK ++ + +  L G +Y  KV+ENC+A  +  G Y+D E KAIE+F   FKD+ FPPGS++ + QSP G+L +SFSKD +IP+   AVI++  LSEAVLE+MIG+  VSPA K+SLA R
Sbjct:   21 VTPPGSTKSYFLGGAGVRGLNIQEEFVKFTGIGVYLEDKAVSSLAAKWKGKSAAELLDSLDFYRDIIKGPFEKLIRGSKLRTLDGREYVRKVSENCVAHMQSVGTYSDEEEKAIEEFRNAFKDQNFPPGSTVFYKQSPTGTLGLSFSKDETIPEHEHAVIDNKPLSEAVLETMIGEIPVSPALKESLATR 210          
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CF1B2_SOYBN (Chalcone--flavonone isomerase 1B-2 OS=Glycine max GN=CHI1B2 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.399e-55
Identity = 109/190 (57.37%), Postives = 143/190 (75.26%), Query Frame = -3
Query:  273 VQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAER 839
            V PP STKS+FLGGAG RGL I+ +FVKFT IGVYLED AV  L  KWKGK+A EL +S++F+RD++ GPFEK ++ + +  L G +Y  KV+ENC+A  +  G Y++AE KAIE+F   FKD+ FPPGS++ + QSP G+L +SFSKD +IP+   AVI++  LSEAVLE+MIG+  VSPA K+SLA R
Sbjct:   21 VTPPASTKSYFLGGAGVRGLNIQEEFVKFTGIGVYLEDKAVSSLGAKWKGKSAAELLDSLDFYRDIIKGPFEKLIRGSKLRTLDGREYVRKVSENCVAHMESVGTYSEAEEKAIEEFRNAFKDQNFPPGSTVFYKQSPTGTLGLSFSKDETIPEHEHAVIDNKPLSEAVLETMIGEIPVSPALKESLATR 210          
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CFI2B_SOYBN (Chalcone--flavonone isomerase 2-B OS=Glycine max GN=CHI2-B PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.877e-54
Identity = 110/191 (57.59%), Postives = 143/191 (74.87%), Query Frame = -3
Query:  273 VQPPGSTKSHFLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSL-TISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAER 839
            V PPGSTKS+FLGGAG RGL I+ +FVKFT IGVYLED AV  LA KWKGK+A EL +S++F+RD++ GPFEK ++ + +  L G +Y  KV+ENC+A  +  G Y+D E KAIE+F   FKD+ FPPGS++ + QSP G+L  + FSKD +IP+   AVI++  LSEAVLE+MIG+  VSPA K+SLA R
Sbjct:   21 VTPPGSTKSYFLGGAGVRGLNIQEEFVKFTGIGVYLEDKAVSSLAAKWKGKSAAELLDSLDFYRDIIKGPFEKLIRGSKLRTLDGREYVRKVSENCVAHMQSVGTYSDEEEKAIEEFRNAFKDQNFPPGSTVFYKQSPTGTLGQLIFSKDETIPEHEHAVIDNKPLSEAVLETMIGEIPVSPALKESLATR 211          
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CFI1_SOYBN (Chalcone--flavonone isomerase 1 (Fragment) OS=Glycine max GN=CHI1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.096e-45
Identity = 94/163 (57.67%), Postives = 120/163 (73.62%), Query Frame = -3
Query:  270 FTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERL 755
            +T IGVYLED AVP LA KWKGKT+EEL  ++ F+RD+++GPFEK ++ + ILPL GA+YS+KV ENC+A  K  G Y DAEA AIEKF E FK+  F PG   L+ QSP G L +SFS+D +IP+   AVIE+  +S AVLE+MIG++ VSP  K+ LA RL
Sbjct:    1 YTGIGVYLEDKAVPSLAAKWKGKTSEELVHTLHFYRDIISGPFEKLIRGSKILPLAGAEYSKKVMENCVAHMKSVGTYGDAEAAAIEKFAEAFKNVNFAPGPLFLYRQSPDGILGLSFSEDVTIPEKEAAVIENKAVSAAVLETMIGEHAVSPDLKRILASRL 163          
BLAST of CF834106 vs. ExPASy Swiss-Prot
Match: CFI_PEA (Chalcone--flavonone isomerase OS=Pisum sativum GN=CHI PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.527e-42
Identity = 100/191 (52.36%), Postives = 130/191 (68.06%), Query Frame = -3
Query:  255 TKSH-FLGGAGERGLEIEGKFVKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGAQYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQSP-GSLTISFSKDGSIPKDGVAVIESNLLSEAVLESMIGKNGVSPAAKKSLAERLSALLN 821
            T++H FLGGAGERGL I G F+KFT IGVYLED A   LA KW+GK  EEL E+++F+RD+++GPFEK ++ + I  L+G +YS KV ENC+A  K  G Y DAE +AI+   ++ +  IF         QSP G L +S SKD SIP+   A+IE+   S AVLE+MIG++ VSP  K+ LA RL ALLN
Sbjct:   26 TENHIFLGGAGERGLTINGTFIKFTCIGVYLEDKADKSLATKWEGKL-EELLETLDFYRDIISGPFEKLIRRSKIKELSGPEYSRKVMENCVAHLKSVGTYGDAEVEAIQNLQKLSRMLIFHLVLLKKNRQSPDGILGLSSSKDISIPEKEDAIIENKAASSAVLETMIGEHAVSPDLKRCLAARLPALLN 215          
The following BLAST results are available for this feature:
BLAST of CF834106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
CFI2_ARATH6.194e-5762.76Chalcone--flavonone isomerase 2 OS=Arabidopsis tha... [more]
CFI1_LOTJA6.194e-5756.63Chalcone--flavonone isomerase 1 OS=Lotus japonicus... [more]
CFI2_MEDSA8.090e-5759.26Chalcone--flavonone isomerase 2 (Fragment) OS=Medi... [more]
CFI3_LOTJA2.354e-5655.10Chalcone--flavonone isomerase 3 OS=Lotus japonicus... [more]
CF1B1_SOYBN3.074e-5658.42Chalcone--flavonone isomerase 1B-1 OS=Glycine max ... [more]
CF1B2_SOYBN3.399e-5557.37Chalcone--flavonone isomerase 1B-2 OS=Glycine max ... [more]
CFI2B_SOYBN2.877e-5457.59Chalcone--flavonone isomerase 2-B OS=Glycine max G... [more]
CFI1_SOYBN1.096e-4557.67Chalcone--flavonone isomerase 1 (Fragment) OS=Glyc... [more]
CFI_PEA2.527e-4252.36Chalcone--flavonone isomerase OS=Pisum sativum GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_04P01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04P01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834106 ID=CF834106; Name=CF834106; organism=Citrus sinensis; type=EST; length=841bp
CTTTTTATTGGTAAGAGTCTGTATATTCAACCAGTACAAAGAACAGGAAA
AACCTTGTCAGGGACATCAGCATTCGAAAATTAACTCAGAATTTGGGAGC
TCTAGCTCTCACAAAGGCAACACAACTGAGAGTCCATAGGAAAGGACACT
AATTTAACATTAAAGAAAAAAAAGTTTGCCAATTTAACAACTCTGCCTTC
GCTTATTATTTGGCAAACTTTTCAACTTCTTCATTTCATCTTATCACTAG
TTACATTCAACAGTGCTGATAGTCTTTCAGCCAAACTCTTCTTTGCTGCA
GGAGAAACACCATTCTTGCCGATCATCGACTCCAGTACTGCCTCAGAAAG
CAGATTACTCTCTATTACCGCAACACCATCTTTCGGTATTGAACCGTCTT
TGGAGAAGCTGATAGTCAATGATCCTGGTGATTGAGTAAAGAGAATTGAG
GATCCTGGTGGGAAAATTTCATCCTTGAAGACCTCAGTGAATTTTTCAAT
AGCTTTGGCTTCAGCATCAGTGTAAATTCCAAAAAATTTCCATATGGCAA
TGCAATTTTCGGCAACCTTCTCTGAGTATTGTGCGCCAGTTAATGGCAAG
ATCATTGTCACCTTCATGAATTTCTCAAAGGGACCTGTGACGACGTCTCT
GAAGAACTCAACGGATTCCGTCAACTCCTCTGCAGTCTTCCCCTTCCATT
TGCCGGCGAGTAACGGCACGGCGTCATCCTCCAAGTACACTCCTATCGCC
GTGAACTTCACGAACTTCCCTTCAATCTCCAATCCTCTCTCCCCTGCGCC
GCCGAGGAAATGCGACTTTGTTGATCCTGGAGGTTGCACGG
back to top